Publications

Accepted or to appear

Papers in international journals

  1. C. Gonzalez-Gonzalo, B. Liefers, B. van Ginneken and C.I. Sanchez. "Iterative augmentation of visual evidence for weakly-supervised lesion localization in deep interpretability frameworks: application to color fundus images", IEEE Transactions on Medical Imaging. Abstract/PDF DOI PMID 32746093

  2. H.-U. Kauczor, A.-M. Baird, T.G. Blum, L. Bonomo, C. Bostantzoglou, O. Burghuber, B. Čepicka, A. Comanescu, S. Courad, A. Devaraj, V. Jespersen, S. Morozov, I.N. Agmon, N. Peled, P. Powell, H. Prosch, S. Ravara, J. Rawlinson, M.-P. Revel, M. Silca, A. Snoeckx, B. van Ginneken, J. van Meerbeeck, C. Vardavas, O. von Stackelberg, M. Gaga, on behalf of the European Society of Radiology (ESR) and the European Respiratory Society (ERS). "ESR/ERS statement paper on lung cancer screening", European Radiology. Abstract/PDF DOI PMID 32052170

  3. S. Kazeminia, C. Baur, A. Kuijper, B. van Ginneken, N. Navab, S. Albarqouni and A. Mukhopadhyay. "GANs for Medical Image Analysis", Artificial Intelligence in Medicine. Abstract arXiv

  4. N. Lessmann, C.I. Sanchez, L. Beenen, L.H. Boulogne, M. Brink, E. Calli, J.-P. Charbonnier, T. Dofferhoff, W.M. van Everdingen, P.K. Gerke, B. Geurts, H.A. Gietema, M. Groeneveld, L. van Harten, N. Hendrix, W. Hendrix, H.J. Huisman, I. Isgum, C. Jacobs, R. Kluge, M. Kok, J. Krdzalic, B. Lassen-Schmidt, K. van Leeuwen, J. Meakin, M. Overkamp, T. van Rees Vellinga, E.M. van Rikxoort, R. Samperna, C. Schaefer-Prokop, S. Schalekamp, E.T. Scholten, C. Sital, L. Stöger, J. Teuwen, K. Vaidhya Venkadesh, C. de Vente, M. Vermaat, W. Xie, B. de Wilde, M. Prokop and B. van Ginneken. "Automated Assessment of CO-RADS and Chest CT Severity Scores in Patients with Suspected COVID-19 Using Artificial Intelligence", Radiology. Abstract/PDF DOI PMID 32729810

  5. B. Liefers, J.M. Colijn, C. Gonzalez-Gonzalo, T. Verzijden, J.J. Wang, N. Joachim, P. Mitchell, C.B. Hoyng, B. van Ginneken, C.C. Klaver and C.I. Sanchez. "A deep learning model for segmentation of geographic atrophy to study its long-term natural history", Ophthalmology. Abstract/PDF DOI arXiv PMID 32197912

  6. L. Maier-Hein, A. Reinke, M. Kozubek, A.L. Martel, T. Arbel, M. Eisenmann, A. Hanbuary, P. Jannin, H. Muller, S. Onogur, J. Saez-Rodriguez, B. van Ginneken, A. Kopp-Schneider and B. Landman. "BIAS: Transparent reporting of biomedical image analysis challenges", Medical Image Analysis. Abstract/PDF DOI arXiv

  7. M. Meijs, F.J.A. Meijer, M. Prokop, B. van Ginneken and R. Manniesing. "Image-level detection of arterial occlusions in 4D-CTA of acute stroke patients using deep learning", Medical Image Analysis. Abstract/PDF DOI

  8. K. Murphy, H. Smits, A.J.G. Knoops, M.B.J.M. Korst, T. Samson, E.T. Scholten, S. Schalekamp, C.M. Schaefer-Prokop, R.H.H.M. Philipsen, A. Meijers, J. Melendez, B. van Ginneken and M. Rutten. "COVID-19 on the Chest Radiograph: A Multi-Reader Evaluation of an AI System", Radiology:201874. Abstract/PDF DOI PMID 32384019

  9. H. Pinckaers, B. van Ginneken and G. Litjens. "Streaming convolutional neural networks for end-to-end learning with multi-megapixel images", IEEE Transactions on Pattern Analysis and Machine Intelligence. Abstract/PDF DOI PMID 32845835

  10. M. Prokop, W. van Everdingen, T. van Rees Vellinga, J. Quarles van Ufford, L. Stoger, L. Beenen, B. Geurts, H. Gietema, J. Krdzalic, C. Schaefer-Prokop, B. van Ginneken, M. Brink and the COVID-19 Standardized Reporting Working Group of the Dutch Radiological Society. "CO-RADS - A categorical CT assessment scheme for patients with suspected COVID-19: definition and evaluation", Radiology:201473. Abstract/PDF DOI PMID 32339082

  11. S. Schalekamp, M. Huisman, R.A. van Dijk, M.F. Boomsma, P.J. Freire Jorge, W.S. de Boer, G.J.M. Herder, M. Bonarius, O.A. Groot, E. Jong, A. Schreuder and C.M. Schaefer-Prokop. "Model-based Prediction of Critical Illness in Hospitalized Patients with COVID-19", Radiology:202723. Abstract/PDF DOI PMID 32787701

  12. A. Schreuder and C.M. Schaefer-Prokop. "Perifissural nodules: ready for application into lung cancer CT screening?", Annals of Translational Medicine. PDF DOI

  13. A. Schreuder, E.T. Scholten, B. van Ginneken and C. Jacobs. "Artificial intelligence for detection and characterization of pulmonary nodules in lung cancer CT screening: ready for practice?", Translational Lung Cancer Research. Abstract/PDF DOI

  14. I. Sechopoulos, J. Teuwen and R. Mann. "Artificial Intelligence for Breast Cancer Detection in Mammography: state of the art", Seminars in Cancer Biology. Abstract/PDF DOI PMID 32531273

  15. M.M. Sieren, F. Brenne, A. Hering, H. Kienapfel, N. Gebauer, T.H. Oechtering, A. Fürschke, F. Wegner, E. Stahlberg, S. Heldmann, J. Barkhausen and A. Frydrychowicz. "Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software", European Radiology. Abstract/PDF DOI PMID 32048038

  16. E. Sogancioglu, K. Murphy, E. Calli, E.T. Scholten, S. Schalekamp and B. Van Ginneken. "Cardiomegaly Detection on Chest Radiographs: Segmentation Versus Classification", IEEE Access;8:94631-94642. Abstract/PDF DOI


2020

Papers in international journals

  1. S.C. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Stacked Bidirectional Convolutional LSTMs for Deriving 3D Non-contrast CT from Spatiotemporal 4D CT", IEEE Transactions on Medical Imaging 2020;39:985-996. Abstract/PDF DOI PMID 31484111

  2. M. Amgad, E.S. Stovgaard, E. Balslev, J. Thagaard, W. Chen, S. Dudgeon, A. Sharma, J.K. Kerner, C. Denkert, Y. Yuan, K. AbdulJabbar, S. Wienert, P. Savas, L. Voorwerk, A.H. Beck, A. Madabhushi, J. Hartman, M.M. Sebastian, H.M. Horlings, J. Hudeček, F. Ciompi, D.A. Moore, R. Singh, E. Roblin, M.L. Balancin, M.-C. Mathieu, J.K. Lennerz, P. Kirtani, I.-C. Chen, J.P. Braybrooke, G. Pruneri, S. Demaria, S. Adams, S.J. Schnitt, S.R. Lakhani, F. Rojo, L. Comerma, S.S. Badve, M. Khojasteh, W.F. Symmans, C. Sotiriou, P. Gonzalez-Ericsson, K.L. Pogue-Geile, R.S. Kim, D.L. Rimm, G. Viale, S.M. Hewitt, J.M.S. Bartlett, F. Penault-Llorca, S. Goel, H.-C. Lien, S. Loibl, Z. Kos, S. Loi, M.G. Hanna, S. Michiels, M. Kok, T.O. Nielsen, A.J. Lazar, Z. Bago-Horvath, L.F.S. Kooreman, J.A.W.M. van der Laak, J. Saltz, B.D. Gallas, U. Kurkure, M. Barnes, R. Salgado and L.A.D. Cooper. "Report on computational assessment of Tumor Infiltrating Lymphocytes from the International Immuno-Oncology Biomarker Working Group", npj Breast Cancer 2020;6(1). PDF DOI

  3. F. Ayatollahi, S.B. Shokouhi and J. Teuwen. "Differentiating Benign and Malignant Mass and non-Mass Lesions in Breast DCE-MRI using Normalized Frequency-based Features", International Journal of Computer Assisted Radiology and Surgery 2020;15:297-307. Abstract/PDF DOI PMID 31838643

  4. M.C.A. Balkenhol, W. Vreuls, C.A.P. Wauters, S.J.J. Mol, J.A.W.M. van der Laak and P. Bult. "Histological subtypes in triple negative breast cancer are associated with specific information on survival", Annals of Diagnostic Pathology 2020;46:151490. Abstract/PDF DOI PMID 32179443

  5. T. Boers, Y. Hu, E. Gibson, D. Barratt, E. Bonmati, J. Krdzalic, F. van der Heijden, J. Hermans and H. Huisman. "Interactive 3D U-net for the Segmentation of the Pancreas in Computed Tomography Scans", Physics in Medicine and Biology 2020;65(6):065002. Abstract/PDF DOI PMID 31978921

  6. W. Bulten, M. Balkenhol, J.-J.A. Belinga, A. Brilhante, A. Çakır, L. Egevad, M. Eklund, X. Farre, K. Geronatsiou, V. Molinie, G. Pereira, P. Roy, G. Saile, P. Salles, E. Schaafsma, J. Tschui, A.-M. Vos, B. Delahunt, H. Samaratunga, D.J. Grignon, A.J. Evans, D.M. Berney, C.-C. Pan, G. Kristiansen, J.G. Kench, J. Oxley, K.R.M. Leite, J.K. McKenney, P.A. Humphrey, S.W. Fine, T. Tsuzuki, M. Varma, M. Zhou, E. Comperat, D.G. Bostwick, K.A. Iczkowski, C. Magi-Galluzzi, J.R. Srigley, H. Takahashi, T. van der Kwast, H. van Boven, R. Vink, J. van der Laak, C. Hulsbergen-van der Kaa and G. Litjens. "Artificial Intelligence Assistance Significantly Improves Gleason Grading of Prostate Biopsies by Pathologists", Modern Pathology 2020. Abstract/PDF DOI PMID 32759979

  7. W. Bulten, H. Pinckaers, H. van Boven, R. Vink, T. de Bel, B. van Ginneken, J. van der Laak, C. Hulsbergen-van de Kaa and G. Litjens. "Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study", Lancet Oncology 2020;21:233-241. Abstract/PDF DOI arXiv PMID 31926805

  8. C. Gonzalez-Gonzalo, V. Sanchez-Gutierrez, P. Hernandez-Martinez, I. Contreras, Y.T. Lechanteur, A. Domanian, B. van Ginneken and C.I. Sanchez. "Evaluation of a deep learning system for the joint automated detection of diabetic retinopathy and age-related macular degeneration", Acta Ophthalmologica 2020;98(4):368-377. Abstract/PDF DOI PMID 31773912

  9. J. Goudsmit and J. Teuwen. "Tussen data en theorie", Tijdschrift voor Toezicht 2020;11(1):48-53. PDF DOI

  10. S.S. Habib, S. Rafiq, S.M.A. Zaidi, R.A. Ferrand, J. Creswell, B. Van Ginneken, W.Z. Jamal, K.S. Azeemi, S. Khowaja and A. Khan. "Evaluation of computer aided detection of tuberculosis on chest radiography among people with diabetes in Karachi Pakistan", Nature Scientific Reports 2020;10:6276. Abstract DOI PMID 32286389

  11. G.E. Humpire Mamani, J. Bukala, E.T. Scholten, M. Prokop, B. van Ginneken and C. Jacobs. "Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning", Radiology: Artificial Intelligence 2020;2(4):e190102. Abstract/PDF DOI

  12. H.-U. Kauczor, A.-M. Baird, T.G. Blum, L. Bonomo, C. Bostantzoglou, O. Burghuber, B. Čepicka, A. Comanescu, S. Couraud, A. Devaraj, V. Jespersen, S. Morozov, I. Nardi Agmon, N. Peled, P. Powell, H. Prosch, S. Ravara, J. Rawlinson, M.-P. Revel, M. Silva, A. Snoeckx, B. van Ginneken, J.P. van Meerbeeck, C. Vardavas, O. von Stackelberg, M. Gaga, E.S. of Radiology (ESR) and the European Respiratory Society (ERS). "ESR/ERS statement paper on lung cancer screening", European Respiratory Journal 2020;55:1900506. Abstract/PDF DOI PMID 32051182

  13. H.J. de Koning, C.M. van der Aalst, P.A. de Jong, E.T. Scholten, K. Nackaerts, M.A. Heuvelmans, J.-W.J. Lammers, C. Weenink, U. Yousaf-Khan, N. Horeweg, S. van 't Westeinde, M. Prokop, W.P. Mali, F.A.A. Mohamed Hoesein, P.M.A. van Ooijen, J.G.J.V. Aerts, M.A. den Bakker, E. Thunnissen, J. Verschakelen, R. Vliegenthart, J.E. Walter, K. Ten Haaf, H.J.M. Groen and M. Oudkerk. "Reduced Lung-Cancer Mortality with Volume CT Screening in a Randomized Trial", New England Journal of Medicine 2020;382:503-513. Abstract/PDF DOI PMID 31995683

  14. T. Kootstra, J. Teuwen, J. Goudsmit, T. Nijboer, M. Dodd and S. Van der Stigchel. "Machine learning-based classification of viewing behavior using a wide range of statistical oculomotor features", Journal of Vision 2020;20(9):1. Abstract/PDF DOI PMID 32876676

  15. Z. Kos, E. Roblin, R.S. Kim, S. Michiels, B.D. Gallas, W. Chen, K.K. van de Vijver, S. Goel, S. Adams, S. Demaria, G. Viale, T.O. Nielsen, S.S. Badve, W.F. Symmans, C. Sotiriou, D.L. Rimm, S. Hewitt, C. Denkert, S. Loibl, S.J. Luen, J.M.S. Bartlett, P. Savas, G. Pruneri, D.A. Dillon, M.C.U. Cheang, A. Tutt, J.A. Hall, M. Kok, H.M. Horlings, A. Madabhushi, J. van der Laak, F. Ciompi, A.-V. Laenkholm, E. Bellolio, T. Gruosso, S.B. Fox, J.C. Araya, G. Floris, J. Hudeček, L. Voorwerk, A.H. Beck, J. Kerner, D. Larsimont, S. Declercq, G.V. den Eynden, L. Pusztai, A. Ehinger, W. Yang, K. AbdulJabbar, Y. Yuan, R. Singh, C. Hiley, M. al Bakir, A.J. Lazar, S. Naber, S. Wienert, M. Castillo, G. Curigliano, M.-V. Dieci, F. Andre, C. Swanton, J. Reis-Filho, J. Sparano, E. Balslev, I.-C. Chen, E.I.S. Stovgaard, K. Pogue-Geile, K.R.M. Blenman, F. Penault-Llorca, S. Schnitt, S.R. Lakhani, A. Vincent-Salomon, F. Rojo, J.P. Braybrooke, M.G. Hanna, M.T. Soler-Monso, D. Bethmann, C.A. Castaneda, K. Willard-Gallo, A. Sharma, H.-C. Lien, S. Fineberg, J. Thagaard, L. Comerma, P. Gonzalez-Ericsson, E. Brogi, S. Loi, J. Saltz, F. Klaushen, L. Cooper, M. Amgad, D.A. Moore and R. Salgado. "Pitfalls in assessing stromal tumor infiltrating lymphocytes (sTILs) in breast cancer", npj Breast Cancer 2020;6(1). PDF DOI

  16. N. Mahomed, B. van Ginneken, R.H.H.M. Philipsen, J. Melendez, D.P. Moore, H. Moodley, T. Sewchuran, D. Mathew and S.A. Madhi. "Computer-aided diagnosis for World Health Organization-defined chest radiograph primary-endpoint pneumonia in children", Pediatric Radiology 2020;50:482-491. Abstract/PDF DOI PMID 31930429

  17. K. Murphy, S.S. Habib, S.M.A. Zaidi, S. Khowaja, A. Khan, J. Melendez, E.T. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R.H.H.M. Philipsen, A. Meijers and B. van Ginneken. "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", Nature Scientific Reports 2020;10:5492. Abstract/PDF DOI arXiv PMID 32218458

  18. I. Olaciregui-Ruiz, I. Torres-Xirau, J. Teuwen, U.A. van der Heide and A. Mans. "A Deep Learning-based correction to EPID dosimetry for attenuation and scatter in the Unity MR-Linac system", Physica Medica 2020;71:124-131. Abstract/PDF DOI PMID 32135486

  19. A. Schreuder, C. Jacobs, E.T. Scholten, B. van Ginneken, C.M. Schaefer-Prokop and M. Prokop. "Typical CT Features of Intrapulmonary Lymph Nodes: A Review", Radiology: Cardiothoracic Imaging 2020;2(4):e190159. Abstract/PDF DOI

  20. A. Schreuder, C. Jacobs, E.T. Scholten, M. Prokop, B. van Ginneken, D.A. Lynch and C.M. Schaefer-Prokop. "Association between the number and size of intrapulmonary lymph nodes and chronic obstructive pulmonary disease severity", PeerJ 2020;8:e9166. Abstract/PDF DOI PMID 32685283

  21. E.F. Thee, D.T. Luttikhuizen, H.G. Lemij, F.D. Verbraak, C.I. Sanchez and C.C. Klaver. "Artificial intelligence for eye care", Nederlands Tijdschrift voor Geneeskunde 2020. Abstract URL

  22. S.G.M. van Velzen, N. Lessmann, B.K. Velthuis, I.E.M. Bank, D.H.J.G. van den Bongard, T. Leiner, P.A. de Jong, W.B. Veldhuis, A. Correa, J.G. Terry, J.J. Carr, M.A. Viergever, H.M. Verkooijen and I. Išgum. "Deep learning for automatic calcium scoring in CT: Validation using multiple cardiac CT and chest CT protocols", Radiology 2020;295(1):66-79. Abstract/PDF DOI PMID 32043947

  23. W. Xie, C. Jacobs, J.-P. Charbonnier and B. van Ginneken. "Relational Modeling for Robust and Efficient Pulmonary Lobe Segmentation in CT Scans", IEEE Transactions on Medical Imaging 2020;39:2664-2675. Abstract/PDF DOI arXiv PMID 32550251

  24. J.C. van Zelst, T. Tan, R.M. Mann and N. Karssemeijer. "Validation of radiologists' findings by computer-aided detection (CAD) software in breast cancer detection with automated 3D breast ultrasound: a concept study in implementation of artificial intelligence software", Acta Radiologica 2020;61:312-320. Abstract/PDF DOI PMID 31324132


Preprints

  1. A. Sekuboyina, A. Bayat, M.E. Husseini, M. Loffler, M. Rempfler, J. Kukacka, G. Tetteh, A. Valentinitsch, C. Payer, D. Stern, M. Urschler, M. Chen, D. Cheng, N. Lessmann, Y. Hu, T. Wang, D. Yang, D. Xu, F. Ambellan, T. Amiranashvili, M. Ehlke, H. Lamecker, S. Lehnert, M. Lirio, N.P. de Olaguer, H. Ramm, M. Sahu, A. Tack, S. Zachow, T. Jiang, X. Ma, C. Angerman, X. Wang, Q. Wei, K. Brown, M. Wolf, A. Kirszenberg, E. Puybareauq, B.H. Menze and J.S. Kirschke. "VerSe: A Vertebrae Labelling and Segmentation Benchmark", arXiv:2001.09193 2020. Abstract

  2. S.C. Wetstein, C. Gonzalez-Gonzalo, G. Bortsova, B. Liefers, F. Dubost, I. Katramados, L. Hogeweg, B. van Ginneken, J.P. Pluim, M. de Bruijne, C.I. Sanchez and M. Veta. "Adversarial Attack Vulnerability of Medical Image Analysis Systems: Unexplored Factors", arXiv:2006.06356 2020. Abstract/PDF arXiv

  3. S.K. Zhou, H. Greenspan, C. Davatzikos, J.S. Duncan, B. van Ginneken, A. Madabhushi, J.L. Prince, D. Rueckert and R.M. Summers. "A review of deep learning in medical imaging: Image traits, technology trends, case studies with progress highlights, and future promises", arXiv:2008.09104 2020. Abstract/PDF


Papers in conference proceedings

  1. H.C. Altun, G. Chlebus, C. Jacobs, H. Meine, B. van Ginneken and H.K. Hahn. "Feasibility of End-To-End Trainable Two-Stage U-Net for Detection of Axillary Lymph Nodes in Contrast-Enhanced CT Based Scans on Sparse Annotations", in: Medical Imaging of Proceedings of the SPIE, 2020, page 113141C. Abstract/PDF DOI

  2. A. Hering and S. Heldmann. "mlVIRNET: Improved Deep Learning Registration Using a Coarse to Fine Approach to Capture all Levels of Motion", in: Bildverarbeitung für die Medizin, 2020, page 175. Abstract/PDF DOI

  3. C. Mercan, G. Reijnen-Mooij, D.T. Martin, J. Lotz, N. Weiss, M. van Gerven and F. Ciompi. "Virtual staining for mitosis detection in Breast Histopathology", in: IEEE International Symposium on Biomedical Imaging, 2020. Abstract/PDF DOI

  4. K. Michielsen, N. Moriakov, J. Teuwen and I. Sechopoulos. "Deep Learning-based Initialization of Iterative Reconstruction for Breast Tomosynthesis", in: 6th International Conference on Image Formation in X-Ray Computed Tomography, 2020.

  5. N. Moriakov, J. Adler and J. Teuwen. "Kernel of CycleGAN as a principal homogeneous space", in: International Conference on Learning Representations, 2020. Abstract/PDF URL

  6. Z. Swiderska-Chadaj, K. Nurzynska, G. Bartlomiej, K. Grunberg, L. van der Woude, M. Looijen-Salamon, A.E. Walts, T. Markiewicz, F. Ciompi and A. Gertych. "A deep learning approach to assess the predominant tumor growth pattern in whole-slide images of lung adenocarcinoma", in: Medical Imaging, volume 11320 of Proceedings of the SPIE, 2020, page 113200D. Abstract/PDF DOI

  7. D. Tellez, D. Hoppener, C. Verhoef, D. Grunhagen, P. Nierop, M. Drozdzal, J. van der Laak and F. Ciompi. "Extending Unsupervised Neural Image Compression With Supervised Multitask Learning", in: Medical Imaging with Deep Learning, 2020. Abstract/PDF


Abstracts

  1. J.-M. Bokhorst, F. Ciompi, I. Zlobec, A. Lugli, M. Vieth, R. Kirsch, J. van der Laak and I. Nagtegaal. "Computer-assisted hot-spot selection for tumor budding assessment in colorectal cancer", in: European Congress of Pathology, 2020. Abstract

  2. J.-M. Bokhorst, I. Nagtegaal, I. Zlobec, A. Lugli, M. Vieth, R. Kirsch, J. van der Laak and F. Ciompi. "Deep learning based tumor bud detection in pan-cytokeratin stained colorectal cancer whole-slide images", in: European Congress of Pathology, 2020. Abstract

  3. C. Gonzalez-Gonzalo, S.C. Wetstein, G. Bortsova, B. Liefers, B. van Ginneken and C.I. Sanchez. "Are adversarial attacks an actual threat for deep learning systems in real-world eye disease screening settings?", in: #_European_Society_of_Retina_Specialists_#, 2020. Abstract URL

  4. B. Liefers, P. Taylor, C. Gonzalez-Gonzalo, A. Tufail and C.I. Sanchez. "Achieving expert level performance in quantifying 13 distinctive features of neovascular age-related macular degeneration on optical coherence tomography", in: #_European_Society_of_Retina_Specialists_#, 2020. Abstract URL

  5. C. Mercan, M. Balkenhol, J. v. d. Laak and F. Ciompi. "Grading nuclear pleomorphism in breast cancer using deep learning", in: European Congress of Pathology, 2020. Abstract

  6. W. Sanderink, J. Teuwen, L. Appelman, I. Sechopoulos, N. Karssemeijer and R. Mann. "Simultaneous multi-slice single-shot DWI compared to routine read-out-segmented DWI for evaluation of breast lesions", in: ISMRM Benelux, 2020. Abstract

  7. C. de Vente, M. van Grinsven, S. De Zanet, A. Mosinska, R. Sznitman, C. Klaver and C.I. Sanchez. "Estimating Uncertainty of Deep Neural Networks for Age-related Macular Degeneration Grading using Optical Coherence Tomography", in: Association for Research in Vision and Ophthalmology, 2020. Abstract


Theses

  1. M.C.A. Balkenhol. "Tissue-based biomarker assessment for predicting prognosis of triple negative breast cancer: the additional value of artificial intelligence", PhD thesis, Radboud University, Nijmegen, 2020. Abstract/PDF URL

  2. T. de Boer. "A feasibility study for Deep Learning Image Guided Guidewire Tracking for Image-guided Interventions", Masters thesis, Radboud University, 2020. Abstract/PDF

  3. F. Khrystyna. "Brain MRI synthesis via pathology factorization and adversarial cycle-consistent learning for data augmentation", Masters thesis, MAIA Master Program, 2020. Abstract/PDF

  4. R. Kluge. "Pneumothorax Detection On Chest Radiographs: A Comparative Analysis Of Public Datasets, Deep Learning Architectures, And Domain Adaptation Via Iterative Self-Training", Masters thesis, Radboud University, 2020. Abstract/PDF

  5. M. Meijs. "Automated Image Analysis and Machine Learning to Detect Cerebral Vascular Pathology in 4D-CTA", PhD thesis, Radboud University, Nijmegen, 2020. Abstract/PDF

  6. J. Spronck. "Multi conditional lung nodule synthesis for improved nodule malignancy classification in Computed Tomography scans", Masters thesis, Universiteit van Amsterdam, 2020. Abstract/PDF URL


2019

Papers in international journals

  1. N.M. deSouza, E. Achten, A. Alberich-Bayarri, F. Bamberg, R. Boellaard, O. Clement, L. Fournier, F. Gallagher, X. Golay, C.P. Heussel, E.F. Jackson, R. Manniesing, M.E. Mayerhofer, E. Neri, J. O'Connor, K.K. Oguz, A. Persson, M. Smits, E.J.R. van Beek, C.J. Zech and E.S. of Radiology. "Validated imaging biomarkers as decision-making tools in clinical trials and routine practice: current status and recommendations from the EIBALL* subcommittee of the European Society of Radiology (ESR)", Insights into Imaging 2019;10:87. Abstract/PDF DOI PMID 31468205

  2. S.C. van de Leemput, M. Meijs, A. Patel, F. Meijer, B. van Ginneken and R. Manniesing. "Multiclass Brain Tissue Segmentation in 4D CT using Convolutional Neural Networks", IEEE Access 2019;7:51557-51569. Abstract/PDF DOI

  3. E. Abels, L. Pantanowitz, F. Aeffner, M.D. Zarella, J. van der Laak, M.M. Bui, V.N. Vemuri, A.V. Parwani, J. Gibbs, E. Agosto-Arroyo, A.H. Beck and C. Kozlowski. "Computational pathology definitions, best practices, and recommendations for regulatory guidance: a white paper from the Digital Pathology Association", Journal of Pathology 2019;249:286-294. Abstract/PDF DOI PMID 31355445

  4. L. Aprupe, G. Litjens, T.J. Brinker, J. van der Laak and N. Grabe. "Robust and accurate quantification of biomarkers of immune cells in lung cancer micro-environment using deep convolutional neural networks", PeerJ 2019;7:e6335. Abstract/PDF DOI PMID 30993030

  5. G. Aresta, C. Jacobs, T. Araujo, A. Cunha, I. Ramos, B. van Ginneken and A. Campilho. "iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network", Nature Scientific Reports 2019;9(11591). Abstract/PDF DOI PMID 31406194

  6. P. Bandi, M. Balkenhol, B. van Ginneken, J. van der Laak and G. Litjens. "Resolution-agnostic tissue segmentation in whole-slide histopathology images with convolutional neural networks", PeerJ 2019;7:e8242. Abstract/PDF DOI PMID 31871843

  7. M.F. Bakker, S.V. de Lange, R.M. Pijnappel, R.M. Mann, P.H.M. Peeters, E.M. Monninkhof, M.J. Emaus, C.E. Loo, R.H.C. Bisschops, M.B.I. Lobbes, M.D.F. de Jong, K.M. Duvivier, J. Veltman, N. Karssemeijer, H.J. de Koning, P.J. van Diest, W.P.T.M. Mali, M.A.A.J. van den Bosch, W.B. Veldhuis, C.H. van Gils and D.T.S. Group. "Supplemental MRI Screening for Women with Extremely Dense Breast Tissue", New England Journal of Medicine 2019;381:2091-2102. Abstract/PDF DOI PMID 31774954

  8. M.C.A. Balkenhol, P. Bult, D. Tellez, W. Vreuls, P.C. Clahsen, F. Ciompi and J.A.W.M. van der Laak. "Deep learning and manual assessment show that the absolute mitotic count does not contain prognostic information in triple negative breast cancer", Cellular Oncology 2019;42:4555-4569. Abstract/PDF DOI PMID 30989469

  9. M.C.A. Balkenhol, D. Tellez, W. Vreuls, P.C. Clahsen, H. Pinckaers, F. Ciompi, P. Bult and J.A.W.M. van der Laak. "Deep learning assisted mitotic counting for breast cancer", Laboratory Investigation 2019. Abstract/PDF DOI PMID 31222166

  10. C. Balta, R.W. Bouwman, M.J. Broeders, N. Karssemeijer, W.J. Veldkamp, I. Sechopoulos and R.E. van Engen. "Optimization of the difference-of-Gaussian channel sets for the channelized Hotelling observer", Journal of Medical Imaging 2019;6(3):035501. Abstract/PDF DOI PMID 31572746

  11. R.J. Becks, R. Manniesing, J. Vister, S. Pegge, S.C. Steens, E.J. van Dijk, M. Prokop and F.J. Meijer. "Brain CT Perfusion Improves Intracranial Vessel Occlusion Detection on CT Angiography", Journal of Neuroradiology 2019;46(2):124-129. Abstract/PDF DOI PMID 29625153

  12. J. Bleker, T. Kwee, R. Dierckx, I. de Jong, H. Huisman and D. Yakar. "Multiparametric MRI and auto-fixed volume of interest-based radiomics signature for clinically significant peripheral zone prostate cancer", European Radiology 2019. Abstract/PDF DOI PMID 31776744

  13. H. Bogunovic, F. Venhuizen, S. Klimscha, S. Apostolopoulos, A. Bab-Hadiashar, U. Bagci, M.F. Beg, L. Bekalo, Q. Chen, C. Ciller, K. Gopinath, A.K. Gostar, K. Jeon, Z. Ji, S.H. Kang, D.D. Koozekanani, D. Lu, D. Morley, K.K. Parhi, H.S. Park, A. Rashno, M. Sarunic, S. Shaikh, J. Sivaswamy, R. Tennakoon, S. Yadav, S. De Zanet, S.M. Waldstein, B.S. Gerendas, C. Klaver, C.I. Sanchez and U. Schmidt-Erfurth. "RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge", IEEE Transactions on Medical Imaging 2019;38:1858-1874. Abstract/PDF DOI PMID 30835214

  14. J.-M. Bokhorst, A. Blank, A. Lugli, I. Zlobec, H. Dawson, M. Vieth, L.L. Rijstenberg, S. Brockmoeller, M. Urbanowicz, J.F. Flejou, R. Kirsch, F. Ciompi, J.A.W.M. van der Laak and I.D. Nagtegaal. "Assessment of individual tumor buds using keratin immunohistochemistry: moderate interobserver agreement suggests a role for machine learning", Modern Pathology 2019. Abstract/PDF DOI PMID 31844269

  15. W. Bulten, P. Bandi, J. Hoven, R. van de Loo, J. Lotz, N. Weiss, J. van der Laak, B. van Ginneken, C. Hulsbergen-van de Kaa and G. Litjens. "Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard", Nature Scientific Reports 2019;9(864). Abstract/PDF DOI arXiv PMID 30696866

  16. J.-P. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, B. Make, E. Regan, J.D. Crapo, E.M. van Rikxoort and D.A. Lynch. "Airway wall thickening on CT: Relation to smoking status and severity of COPD", Respiratory Medicine 2019;146:36-41. Abstract/PDF DOI PMID 30665516

  17. G. Chlebus, H. Meine, S. Thoduka, N. Abolmaali, B. van Ginneken, H.K. Hahn and A. Schenk. "Reducing inter-observer variability and interaction time of MR liver volumetry by combining automatic CNN-based liver segmentation and manual corrections", PLoS One 2019;14:e0217228. Abstract/PDF DOI PMID 31107915

  18. M.U. Dalmis, A. Gubern-Merida, S. Vreemann, P. Bult, N. Karssemeijer, R. Mann and J. Teuwen. "Artificial Intelligence Based Classification of Breast Lesions Imaged With a Multi-Parametric Breast MRI Protocol With ultrafast DCE-MRI, T2 and DWI", Investigative Radiology 2019;56:325-332. Abstract/PDF DOI PMID 30652985

  19. O.A. Debats, G.J.S. Litjens and H.J. Huisman. "Lymph node detection in MR Lymphography: false positive reduction using multi-view convolutional neural networks", PeerJ 2019;7:e8052. Abstract/PDF DOI PMID 31772836

  20. R.P. Finger, S. Schmitz-Valckenberg, M. Schmid, G.S. Rubin, H. Dunbar, A. Tufail, D.P. Crabb, A. Binns, C.I. Sanchez, P. Margaron, G. Normand, M.K. Durbin, U.F.O. Luhmann, P. Zamiri, J. Cunha-Vaz, F. Asmus, F.G. Holz and on behalf of the MACUSTAR consortium. "MACUSTAR: Development and Clinical Validation of Functional, Structural, and Patient-Reported Endpoints in Intermediate Age-Related Macular Degeneration", Ophthalmologica 2019;241:61-72. Abstract/PDF DOI PMID 30153664

  21. J.J. Gomez-Valverde, A. Anton, G. Fatti, B. Liefers, A. Herranz, A. Santos, C.I. Sanchez and M.J. Ledesma-Carbayo. "Automatic glaucoma classification using color fundus images based on convolutional neural networks and transfer learning", Biomedical Optics Express 2019;10(2):892-913. Abstract/PDF DOI PMID 30800522

  22. O. Geessink, A. Baidoshvili, J. Klaase, B. Ehteshami Bejnordi, G. Litjens, G. van Pelt, W. Mesker, I. Nagtegaal, F. Ciompi and J. van der Laak. "Computer aided quantification of intratumoral stroma yields an independent prognosticator in rectal cancer", Cellular Oncology 2019:1-11. Abstract/PDF DOI PMID 30825182

  23. B. van Ginneken. "Deep Learning for Triage of Chest Radiographs: Should Every Institution Train Its Own System?", Radiology 2019;290:545-546. PDF DOI PMID 30422089

  24. A. Halilovic, D.I. Verweij, A. Simons, M.J.P.L. Stevens-Kroef, S. Vermeulen, J. Elsink, B.B.J. Tops, I. Otte-Holler, J.A.W.M. van der Laak, C. van de Water, O.B.A. Boelens, M.S. Schlooz-Vries, J.R. Dijkstra, I.D. Nagtegaal, J. Tol, P.H.J. van Cleef, P.N. Span and P. Bult. "HER2, chromosome 17 polysomy and DNA ploidy status in breast cancer; a translational study", Scientific Reports 2019;9:11679. Abstract/PDF DOI PMID 31406196

  25. T.J. Heesterbeek, E.K. de Jong, I.E. Acar, J.M.M. Groenewoud, B. Liefers, C.I. Sanchez, T. Peto, C.B. Hoyng, D. Pauleikhoff, H.W. Hense and A.I. den Hollander. "Genetic risk score has added value over initial clinical grading stage in predicting disease progression in age-related macular degeneration", Nature Scientific Reports 2019;9:6611. Abstract/PDF DOI PMID 31036867

  26. A. Hering, S. Kuckertz, S. Heldmann and M.P. Heinrich. "Memory-efficient 2.5D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans", Computer Assisted Radiology and Surgery 2019. Abstract/PDF DOI PMID 31538274

  27. M. Hermsen, T. de Bel, M. den Boer, E.J. Steenbergen, J. Kers, S. Florquin, J.J.T.H. Roelofs, M.D. Stegall, M.P. Alexander, B.H. Smith, B. Smeets, L.B. Hilbrands and J.A.W.M. van der Laak. "Deep-learning based histopathologic assessment of kidney tissue", Journal of the American Society of Nephrology 2019;30:1968-1979. Abstract/PDF DOI PMID 31488607

  28. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "Automated Fetal Head Detection and Circumference Estimation from Free-Hand Ultrasound Sweeps Using Deep Learning in Resource-Limited Countries", Ultrasound in Medicine and Biology 2019;45(3):773-785. Abstract/PDF DOI PMID 30573305

  29. H. Huisman. "Solid Science of AI Supporting Bladder Cancer CT Reading", Academic Radiology 2019;26(9):1146-1147. PDF DOI PMID 31324578

  30. C. Jacobs and B. van Ginneken. "Google's lung cancer AI: a promising tool that needs further validation", Nature Reviews Clinical Oncology 2019;16:532-533. Abstract/PDF DOI PMID 31249401

  31. N. Khalili, N. Lessmann, E. Turk, N.H. Claessens, R. de Heus, T. Kolk, M.A. Viergever, M.J. Benders and I. Išgum. "Automatic brain tissue segmentation in fetal MRI using convolutional neural networks", Magnetic Resonance Imaging 2019;64:77-89. DOI PMID 31181246

  32. J. van der Laak, F. Ciompi and G. Litjens. "No pixel-level annotations needed", Nature Biomedical Engineering 2019;3:855-856. PDF DOI PMID 31624355

  33. S.C. van de Leemput, J. Teuwen, B. van Ginneken and R. Manniesing. "MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks", #JOSS# 2019;4(39):1576. Abstract/PDF DOI

  34. E.M. van Leijsen, M.I. Bergkamp, I.W. van Uden, S. Cooijmans, M. Ghafoorian, H.M. van der Holst, D.G. Norris, R.P. Kessels, B. Platel, A.M. Tuladhar and F.-E. de Leeuw. "Cognitive consequences of regression of cerebral small vessel disease", European Stroke Journal 2019;4:85-89. Abstract/PDF DOI PMID 31165098

  35. N. Lessmann, B. van Ginneken, P.A. de Jong and I. Išgum. "Iterative fully convolutional neural networks for automatic vertebra segmentation and identification", Medical Image Analysis 2019;53:142-155. Abstract/PDF DOI arXiv PMID 30771712

  36. N. Lessmann, P.A. de Jong, C. Celeng, R.A.P. Takx, M.A. Viergever, B. van Ginneken and I. Išgum. "Sex Differences in Coronary Artery and Thoracic Aorta Calcification and Their Association With Cardiovascular Mortality in Heavy Smokers", JACC Cardiovascular Imaging 2019;12:1808-1817. Abstract/PDF DOI PMID 30660540

  37. G. Litjens, F. Ciompi, J.M. Wolterink, B.D. de Vos, T. Leiner, J. Teuwen and I. Isgum. "State-of-the-Art Deep Learning in Cardiovascular Image Analysis", JACC Cardiovascular Imaging 2019;12:1549-1565. Abstract/PDF DOI PMID 31395244

  38. M.C. Maas, G.J.S. Litjens, A.J. Wright, U.I. Attenberger, M.A. Haider, T.H. Helbich, B. Kiefer, K.J. Macura, D.J.A. Margolis, A.R. Padhani, K.M. Selnaes, G.M. Villeirs, J.J. Futterer and T.W.J. Scheenen. "A Single-Arm, Multicenter Validation Study of Prostate Cancer Localization and Aggressiveness With a Quantitative Multiparametric Magnetic Resonance Imaging Approach", Investigative Radiology 2019. Abstract/PDF DOI PMID 30946180

  39. M. Meijs, S.A. Pegge, K. Murayama, H.D. Boogaarts, M. Prokop, P.W. Willems, R. Manniesing and F.J. Meijer. "Color mapping of 4D-CTA for the detection of cranial arteriovenous shunts", American Journal of Neuroradiology 2019;40(9):1498-1504. Abstract/PDF DOI PMID 31395664

  40. M. Mullooly, B. Ehteshami Bejnordi, R.M. Pfeiffer, S. Fan, M. Palakal, M. Hada, P.M. Vacek, D.L. Weaver, J.A. Shepherd, B. Fan, A.P. Mahmoudzadeh, J. Wang, S. Malkov, J.M. Johnson, S.D. Herschorn, B.L. Sprague, S. Hewitt, L.A. Brinton, N. Karssemeijer, J. van der Laak, A. Beck, M.E. Sherman and G.L. Gierach. "Application of convolutional neural networks to breast biopsies to delineate tissue correlates of mammographic breast density", NPJ Breast Cancer 2019;5:43. Abstract/PDF DOI PMID 31754628

  41. I.D. Munsterman, M. Van Erp, G. Weijers, C. Bronkhorst, C.L. de Korte, J.P. Drenth, J.A. van der Laak and E.T. Tjwa. "A Novel Automatic Digital Algorithm that Accurately Quantifies Steatosis in NAFLD on Histopathological Whole-Slide Images", Cytometry Part B-Clinical Cytometry 2019. Abstract/PDF DOI PMID 31173462

  42. G. Napolitano, E. Lynge, M. Lillholm, I. Vejborg, C.H. van Gils, M. Nielsen and N. Karssemeijer. "Change in mammographic density across birth cohorts of Dutch breast cancer screening participants", International Journal of Cancer 2019;145:2954-2962. Abstract/PDF DOI PMID 30762225

  43. A. Patel, S.C. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Image Level Training and Prediction: Intracranial Hemorrhage Identification in 3D Non-Contrast CT", IEEE Access 2019;7:92355-92364. Abstract/PDF DOI

  44. A. Patel, F.H.B.M. Schreuder, C.J.M. Klijn, M. Prokop, B. van Ginneken, H.A. Marquering, Y.B.W.E.M. Roos, M.I. Baharoglu, F.J.A. Meijer and R. Manniesing. "Intracerebral haemorrhage segmentation in non-contrast CT", Nature Scientific Reports 2019;9:17858. Abstract/PDF DOI PMID 31780815

  45. R.H.H.M. Philipsen, C.I. Sanchez, J. Melendez, W.J. Lew and B. van Ginneken. "Automated chest X-ray reading for tuberculosis in the Philippines to improve case detection: a cohort study", International Journal of Tuberculosis and Lung Disease 2019;23:805-810. Abstract/PDF DOI PMID 31439111

  46. S.J. van Riel, C. Jacobs, E.T. Scholten, R. Wittenberg, M.M. Winkler Wille, B. de Hoop, R. Sprengers, O.M. Mets, B. Geurts, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Observer variability for Lung-RADS categorisation of lung cancer screening CTs: impact on patient management", European Radiology 2019;29(2):924-931. Abstract/PDF DOI PMID 30066248

  47. A. Rodriguez-Ruiz, K. Lang, A. Gubern-Merida, J. Teuwen, M. Broeders, G. Gennaro, P. Clauser, T.H. Helbich, M. Chevalier, T. Mertelmeier, M.G. Wallis, I. Andersson, S. Zackrisson, I. Sechopoulos and R.M. Mann. "Can we reduce the workload of mammographic screening by automatic identification of normal exams with artificial intelligence? A feasibility study", European Radiology 2019;29:4825-4832. Abstract/PDF DOI PMID 30993432

  48. S. Saadatmand, H.A. Geuzinge, E.J.T. Rutgers, R.M. Mann, D.B.W. de Roy van Zuidewijn, H.M. Zonderland, R.A.E.M. Tollenaar, M.B.I. Lobbes, M.G.E.M. Ausems, M. van 't Riet, M.J. Hooning, I. Mares-Engelberts, E.J.T. Luiten, E.A.M. Heijnsdijk, C. Verhoef, N. Karssemeijer, J.C. Oosterwijk, I.-M. Obdeijn, H.J. de Koning, M.M.A. Tilanus-Linthorst and F. study group. "MRI versus mammography for breast cancer screening in women with familial risk (FaMRIsc): a multicentre, randomised, controlled trial", Lancet Oncology 2019;20:1136-1147. Abstract/PDF DOI PMID 31221620

  49. W.B.G. Sanderink, B.I. Laarhuis, L.J.A. Strobbe, I. Sechopoulos, P. Bult, N. Karssemeijer and R.M. Mann. "A systematic review on the use of the breast lesion excision system in breast disease", Insights into Imaging 2019;10:49. Abstract/PDF DOI PMID 31049740

  50. A. Schreuder, C. Jacobs, L. Gallardo-Estrella, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Predicting all-cause and lung cancer mortality using emphysema score progression rate between baseline and follow-up chest CT images: A comparison of risk model performances", PLoS One 2019;14:e0212756. Abstract/PDF DOI PMID 30789954

  51. V. Schreur, A. de Breuk, F.G. Venhuizen, C.I. Sanchez, C.J. Tack, B.J. Klevering, E.K. de Jong and C.B. Hoyng. "Retinal hyperreflective foci in type 1 diabetes mellitus", Retina 2019. Abstract/PDF DOI PMID 31356496

  52. V. Schreur, A. Domanian, B. Liefers, F.G. Venhuizen, B.J. Klevering, C.B. Hoyng, E.K. de Jong and T. Theelen. "Morphological and topographical appearance of microaneurysms on optical coherence tomography angiography", British Journal of Ophthalmology 2019;103(5):630-635. Abstract/PDF DOI PMID 29925511

  53. B. Sturm, D. Creytens, M.G. Cook, J. Smits, M.C.R.F. van Dijk, E. Eijken, E. Kurpershoek, H.V.N. Kusters-Vandevelde, A.H.A.G. Ooms, C. Wauters, W.A.M. Blokx and J.A.W.M. van der Laak. "Validation of Whole-slide Digitally Imaged Melanocytic Lesions: Does Z-Stack Scanning Improve Diagnostic Accuracy?", Journal of Pathology Informatics 2019;10:6. Abstract/PDF DOI PMID 30972225

  54. Z. Swiderska-Chadaj, H. Pinckaers, M. van Rijthoven, M. Balkenhol, M. Melnikova, O. Geessink, Q. Manson, M. Sherman, A. Polonia, J. Parry, M. Abubakar, G. Litjens, J. van der Laak and F. Ciompi. "Learning to detect lymphocytes in immunohistochemistry with deep learning", Medical Image Analysis 2019;58:101547. Abstract/PDF DOI PMID 31476576

  55. M. Tammemagi, A.J. Ritchie, S. Atkar-Khattra, B. Dougherty, C. Sanghera, J.R. Mayo, R. Yuan, D. Manos, A.M. McWilliams, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, J.M.Seely, P. Burrowes, R. Bhatia, E.A.Haider, C. Boylan, C. Jacobs, B. van Ginneken, M.-S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Predicting Malignancy Risk of Screen Detected Lung Nodules - Mean Diameter or Volume", Journal of Thoracic Oncology 2019;14:203-211. Abstract/PDF DOI PMID 30368011

  56. D. Tellez, G. Litjens, P. Bandi, W. Bulten, J.-M. Bokhorst, F. Ciompi and J. van der Laak. "Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology", Medical Image Analysis 2019;58:101544. Abstract/PDF DOI PMID 31466046

  57. D. Tellez, G. Litjens, J. van der Laak and F. Ciompi. "Neural Image Compression for Gigapixel Histopathology Image Analysis", IEEE Transactions on Pattern Analysis and Machine Intelligence 2019;58:101544. Abstract/PDF DOI PMID 31442971

  58. D. Valkenburg, E.H. Runhart, N.M. Bax, B. Liefers, S.L. Lambertus, C.I. Sanchez, F.P. Cremers and C.B. Hoyng. "Highly variable disease courses in siblings with Stargardt disease", Ophthalmology 2019;126:1712-1721. Abstract/PDF DOI PMID 31522899

  59. M. Veta, Y.J. Heng, N. Stathonikos, B.E. Bejnordi, F. Beca, T. Wollmann, K. Rohr, M.A. Shah, D. Wang, M. Rousson, M. Hedlund, D. Tellez, F. Ciompi, E. Zerhouni, D. Lanyi, M. Viana, V. Kovalev, V. Liauchuk, H.A. Phoulady, T. Qaiser, S. Graham, N. Rajpoot, E. Sjoblom, J. Molin, K. Paeng, S. Hwang, S. Park, Z. Jia, E.I.-C. Chang, Y. Xu, A.H. Beck, P.J. van Diest and J.P.W. Pluim. "Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge", Medical Image Analysis 2019;54(5):111-121. Abstract/PDF DOI PMID 30861443


Preprints

  1. M. Argus, C. Schaefer-Prokop, D.A. Lynch and B. van Ginneken. "Function Follows Form: Regression from Complete Thoracic Computed Tomography Scans", arXiv:1909.12047 2019. Abstract/PDF arXiv

  2. P. Bilic, P.F. Christ, E. Vorontsov, G. Chlebus, H. Chen, Q. Dou, C.-W. Fu, X. Han, P.-A. Heng, J. Hesser, S. Kadoury, T. Konopczynski, M. Le, C. Li, X. Li, J. Lipkova, J. Lowengrub, H. Meine, J.H. Moltz, C. Pal, M. Piraud, X. Qi, J. Qi, M. Rempfler, K. Roth, A. Schenk, A. Sekuboyina, E. Vorontsov, P. Zhou, C. Hulsemeyer, M. Beetz, F. Ettlinger, F. Gruen, G. Kaissis, F. Lohofer, R. Braren, J. Holch, F. Hofmann, W. Sommer, V. Heinemann, C. Jacobs, G.E. Humpire Mamani, B. van Ginneken, G. Chartrand, A. Tang, M. Drozdzal, A. Ben-Cohen, E. Klang, M.M. Amitai, E. Konen, H. Greenspan, J. Moreau, A. Hostettler, L. Soler, R. Vivanti, A. Szeskin, N. Lev-Cohain, J. Sosna, L. Joskowicz and B.H. Menze. "The Liver Tumor Segmentation Benchmark (LiTS)", arXiv:1901.04056 2019. Abstract

  3. R. Dilz, L. Schröder, N. Moriakov, J.-J. Sonke and J. Teuwen. "Learned SIRT for Cone Beam Computed Tomography Reconstruction", arXiv:1908.10715 2019. Abstract

  4. C. Gonzalez-Gonzalo, B. Liefers, B. van Ginneken and C.I. Sanchez. "Iterative augmentation of visual evidence for weakly-supervised lesion localization in deep interpretability frameworks", arXiv:1910.07373 2019. Abstract

  5. S. Hu, D. Worrall, S. Knegt, B. Veeling, H. Huisman and M. Welling. "Supervised uncertainty quantification for segmentation with multiple annotations", arXiv:1907.01949 2019. Abstract

  6. B. Liefers, J.M. Colijn, C. Gonzalez-Gonzalo, T. Verzijden, P. Mitchell, C.B. Hoyng, B. van Ginneken, C.C. Klaver and C.I. Sanchez. "A deep learning model for segmentation of geographic atrophy to study its long-term natural history", arXiv:1908.05621 2019. Abstract arXiv

  7. L. Maier-Hein, A. Reinke, M. Kozubek, A.L. Martel, T. Arbel, M. Eisenmann, A. Hanbuary, P. Jannin, H. Muller, S. Onogur, J. Saez-Rodriguez, B. van Ginneken, A. Kopp-Schneider and B. Landman. "BIAS: Transparent reporting of biomedical image analysis challenges", arXiv:1910.04071 2019. Abstract/PDF arXiv

  8. K. Murphy, S.S. Habib, S.M.A. Zaidi, S. Khowaja, A. Khan, J. Melendez, E.T. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R.H.H.M. Philipsen, A. Meijers and B. van Ginneken. "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", arXiv:1903.03349 2019. Abstract arXiv

  9. H. Pinckaers, B. van Ginneken and G. Litjens. "Streaming convolutional neural networks for end-to-end learning with multi-megapixel images", arXiv:1911.04432 2019. Abstract

  10. P. Putzky, D. Karkalousos, J. Teuwen, N. Moriakov, B. Bakker, M. Caan and M. Welling. "i-RIM applied to the fastMRI challenge", arXiv:1910.08952 2019. Abstract/PDF

  11. A.L. Simpson, M. Antonelli, S. Bakas, M. Bilello, K. Farahani, B. van Ginneken, A. Kopp-Schneider, B.A. Landman, G. Litjens, B. Menze, O. Ronneberger, R.M. Summers, P. Bilic, P.F. Christ, R.K.G. Do, M. Gollub, J. Golia-Pernicka, S.H. Heckers, W.R. Jarnagin, M.K. McHugo, S. Napel, E. Vorontsov, L. Maier-Hein and M.J. Cardoso. "A large annotated medical image dataset for the development and evaluation of segmentation algorithms", arXiv:1902.09063 2019. Abstract arXiv


Papers in conference proceedings

  1. T. de Bel, M. Hermsen, J. Kers, J. van der Laak and G. Litjens. "Stain-Transforming Cycle-Consistent Generative Adversarial Networks for Improved Segmentation of Renal Histopathology", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  2. J.-M. Bokhorst, H. Pinckaers, P. van Zwam, I. Nagetgaal, J. van der Laak and F. Ciompi. "Learning from sparsely annotated data for semantic segmentation in histopathology images", in: Medical Imaging with Deep Learning, volume 102 of Proceedings of Machine Learning Research, 2019, pages 81-94. Abstract/PDF URL

  3. M. Caballo, J. Teuwen, R. Mann and I. Sechopolous. "Breast parenchyma analysis and classification for breast masses detection using texture feature descriptors and neural networks in dedicated breast CT images", in: Medical Imaging of Proceedings of the SPIE, 2019. Abstract/PDF DOI

  4. E. Calli, K. Murphy, E. Sogancioglu and B. van Ginneken. "FRODO: Free rejection of out-of-distribution samples: application to chest x-ray analysis", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  5. E. Calli, E. Sogancioglu, E.T. Scholten, K. Murphy and B. van Ginneken. "Handling label noise through model confidence and uncertainty: application to chest radiograph classification", in: Medical Imaging of Proceedings of the SPIE, 2019, page 1. Abstract/PDF DOI

  6. K. Dercksen, W. Bulten and G. Litjens. "Dealing with Label Scarcity in Computational Pathology: A Use Case in Prostate Cancer Classification", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  7. A. Hering, B. van Ginneken and S. Heldmann. "mlVIRNET: Multilevel Variational Image Registration Network", in: Medical Image Computing and Computer-Assisted Intervention, volume 11769 of Lecture Notes in Computer Science, 2019, pages 257-265. Abstract/PDF DOI arXiv

  8. A. Hering and S. Heldmann. "Unsupervised Learning for Large Motion Thoracic CT Follow-Up Registration", in: Medical Imaging, volume 10949 of Proceedings of the SPIE, 2019, page 109491B. Abstract/PDF DOI

  9. T.L.A. van den Heuvel, C.L. de Korte and B. van Ginneken. "Automated interpretation of prenatal ultrasound using a predefined acquisition protocol in resource-limited countries", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  10. M. Hosseinzadeh, P. Brand and H. Huisman. "Effect of Adding Probabilistic Zonal Prior in Deep Learning-based Prostate Cancer Detection", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  11. N. Lessmann, J.M. Wolterink, M. Zreik, M.A. Viergever, B. van Ginneken and I. Isgum. "Vertebra partitioning with thin-plate spline surfaces steered by a convolutional neural network", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF arXiv

  12. B. Liefers, C. Gonzalez-Gonzalo, C. Klaver, B. van Ginneken and C.I. Sanchez. "Dense Segmentation in Selected Dimensions: Application to Retinal Optical Coherence Tomography", in: Medical Imaging with Deep Learning, volume 102 of Proceedings of Machine Learning Research, 2019, pages 337-346. Abstract/PDF URL

  13. H. Meine and A. Hering. "Efficient prealignment of CT scans for registration through a bodypart regressor", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  14. C. Mercan, M. Balkenhol, J. van der Laak and F. Ciompi. "From Point Annotations to Epithelial Cell Detection in Breast Cancer Histopathology using RetinaNet", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  15. N. Moriakov, K. Michielsen, R. Mann, J. Adler, I. Sechopolous and J. Teuwen. "Deep learning framework for digital breast tomosynthesis reconstruction", in: Medical Imaging of Proceedings of the SPIE, 2019. Abstract/PDF DOI arXiv

  16. T.F.A. van der Ouderaa, D.E. Worrall and B. van Ginneken. "Chest CT Super-resolution and Domain-adaptation using Memory-efficient 3D Reversible GANs", in: Medical Imaging with Deep Learning, 2019. Abstract/PDF URL

  17. H. Pinckaers, W. Bulten and G. Litjens. "High resolution whole prostate biopsy classification using streaming stochastic gradient descent", in: Medical Imaging of Proceedings of the SPIE, 2019, page 1. Abstract/PDF DOI

  18. D. Ruhe, V. Codreanu, C. van Leeuwen, D. Podareanu, V. Saletore and J. Teuwen. "Generating CT-scans with 3D Generative Adversarial Networks Using a Supercomputer", in: Medical Imaging meets NeurIPS, 2019. Abstract

  19. J. van Vugt, E. Marchiori, R. Mann, A. Gubern-Merida, N. Moriakov and J. Teuwen. "Vendor-independent soft tissue lesion detection using weakly supervised and unsupervised adversarial domain adaptation", in: Medical Imaging of Proceedings of the SPIE, 2019. Abstract/PDF DOI


Abstracts

  1. J.-M. Bokhorst, H. Dawson, A. Blank, I. Zlobec, A. Lugli, M. Vieth, R. Kirsch, M. Urbanowicz, S. Brockmoeller, J.-F. Flejou, L. Rijstenberg, J. van der Laak, F. Ciompi and I. Nagtegaal. "Assessment of tumor buds in colorectal cancer. A large-scale international digital observer study", in: European Congress of Pathology, 2019. Abstract

  2. W. Bulten, H. Pinckaers, C. Hulsbergen-van de Kaa and G. Litjens. "Automated Gleason Grading of Prostate Biopsies Using Deep Learning", in: United States and Canadian Academy of Pathology (USCAP) 108th Annual Meeting, 2019. Abstract

  3. G. Chlebus, G.E. Humpire Mamani, A. Schenk, B. van Ginneken and H. Meine. "Mimicking radiologists to improve the robustness of deep-learning based automatic liver segmentation", in: Annual Meeting of the Radiological Society of North America, 2019. Abstract

  4. J. Engelberts, C. Gonzalez-Gonzalo, C.I. Sanchez and M.J. van Grinsven. "Automatic Segmentation of Drusen and Exudates on Color Fundus Images using Generative Adversarial Networks", in: Association for Research in Vision and Ophthalmology, 2019. Abstract

  5. C. Gonzalez-Gonzalo, B. Liefers, A. Vaidyanathan, H. van Zeeland, C.C.W. Klaver and C.I. Sanchez. "Opening the "black box"? of deep learning in automated screening of eye diseases", in: Association for Research in Vision and Ophthalmology, 2019. Abstract URL

  6. D. Grob, L.J. Oostveen, C. Jacobs, M. Prokop, C. Schaefer-Prokop, I. Sechopoulos and M. Brink. "Intra-patient comparison of pulmonary nodule enhancement in subtraction CT and dual-energy CT", in: Annual Meeting of the European Society of Thoracic Imaging, 2019. Abstract

  7. T.L.A. van den Heuvel, B. van Ginneken and C.L. de Korte. "Improving Maternal Care In Resource-Limited Settings Using A Low-Cost Ultrasound Device And Machine Learning", in: Dutch Bio-Medical Engineering Conference, 2019. Abstract/PDF

  8. C. Jacobs and B. van Ginneken. "Deep learning for detection and characterization of lung nodules", in: Annual Meeting of the European Society of Thoracic Imaging, 2019. Abstract

  9. C. Jacobs, E. Scholten, A. Schreuder, M. Prokop and B. van Ginneken. "An observer study comparing radiologists with the prize-winning lung cancer detection algorithms from the 2017 Kaggle Data Science Bowl", in: Annual Meeting of the Radiological Society of North America, 2019. Abstract

  10. B. Liefers, J. Colijn, C. Gonzalez-Gonzalo, A. Vaidyanathan, H. van Zeeland, P. Mitchell, C. Klaver and C.I. Sanchez. "Prediction of areas at risk of developing geographic atrophy in color fundus images using deep learning", in: Association for Research in Vision and Ophthalmology, 2019. Abstract

  11. W. Sanderink, J. Teuwen, L. Appelman, I. Sechopoulos, N. Karssemeijer and R. Mann. "Simultaneous multi-slice single-shot DWI compared to routine read-out-segmented DWI for evaluation of breast lesions", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2019. Abstract

  12. M. Silva, G. Milanese, F. Sabia, C. Jacobs, B. van Ginneken, M. Prokop, C. Schaefer-Prokop, A. Marchiano, N. Sverzellati and U. Pastorino. "Lung cancer risk after baseline round of screening: Only 20% of NLST eligibles require annual round", in: Annual Meeting of the European Society of Thoracic Imaging, 2019. Abstract

  13. M. Silva, G. Milanese, F. Sabia, C. Jacobs, B. van Ginneken, M. Prokop, C. Schaefer-Prokop, S. Sestini, A. Marchiano, N. Sverzellati and U. Pastorino. "Lung Cancer Screening in NLST Eligibles: Tailoring Annual Low-Dose Computed Tomography by Post-Test Risk Stratification", in: Annual Meeting of the Radiological Society of North America, 2019. Abstract

  14. D. Valkenburg, E. Runhart, B. Liefers, S. Lambertus, C.I. Sanchez, F.P. Cremers, B. Nathalie M and C.C.B. Hoyng. "Familial discordance in disease phenotype in siblings with Stargardt disease", in: Association for Research in Vision and Ophthalmology, 2019. Abstract

  15. H. van Zeeland, J. Meakin, B. Liefers, C. Gonzalez-Gonzalo, A. Vaidyanathan, B. van Ginneken, C.C.W. Klaver and C.I. Sanchez. "EyeNED workstation: Development of a multi-modal vendor-independent application for annotation, spatial alignment and analysis of retinal images", in: Association for Research in Vision and Ophthalmology, 2019. Abstract


Theses

  1. C. Balta. "Objective image quality assessment in X-ray breast imaging", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2019. Abstract/PDF

  2. M.U. Dalmis. "Automated Analysis of Breast MRI From traditional methods into deep learning", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF URL

  3. K. Dercksen. "Prostate Cancer Classification and Label Scarcity", Masters thesis, Radboud University, 2019. PDF

  4. L.G. Estrella. "Quantification of COPD biomarkers in thoracic CT scans", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF URL

  5. D. Geijs. "Tumor segmentation in fluorescent TNBC immunohistochemical multiplex images using deep learning", Masters thesis, University of Twente, 2019. Abstract/PDF

  6. D. Grob. "Functional CT Imaging of the Lung: Substraction CT as a novel technique", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2019. Abstract/PDF

  7. T.L.A. van den Heuvel. "Automated low-cost ultrasound: improving antenatal care in resource-limited settings", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF URL

  8. M. Kok. "Metastases Detection in Lymph Nodes using Transfer Learning", Masters thesis, Radboud University, 2019. Abstract/PDF

  9. N. Lessmann. "Machine Learning based quantification of extrapulmonary diseases in chest CT", PhD thesis, Utrecht University, 2019. Abstract/PDF URL

  10. T. van der Ouderaa. "Reversible Networks for Memory-efficient Image-to-Image Translation in 3D Medical Imaging", Masters thesis, University of Amsterdam, 2019. Abstract/PDF

  11. R. Philipsen. "Automated chest radiography reading. Improvements, validation, and cost-effectiveness analysis", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF URL

  12. A.R. Ruiz. "Artificial intelligence & tomosynthesis for breast cancer detection", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF URL

  13. E. Smit. "Feasibility of a single-acquisition CT stroke protocol", PhD thesis, University of Utrecht, 2019. Abstract/PDF

  14. F. Venhuizen. "Machine Learning for Quantification of Age-Related Macular Degeneration Imaging Biomarkers in Optical Coherence Tomography", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2019. Abstract/PDF

  15. J. Winkens. "Out-of-distribution detection for computational pathology with multi-head ensembles", Masters thesis, University of Amsterdam, 2019. Abstract/PDF

  16. J. van Zelst. "Automated 3D breast ultrasound Advances in breast cancer detection, diagnosis and screening", PhD thesis, Radboud University, Nijmegen, 2019. Abstract/PDF


2018

Papers in international journals

  1. S.G. Armato, H. Huisman, K. Drukker, L. Hadjiiski, J.S. Kirby, N. Petrick, G. Redmond, M.L. Giger, K. Cha, A. Mamonov, J. Kalpathy-Cramer and K. Farahani. "The PROSTATEx Challenges for Computerized Classification of Prostate Lesions from Multi-Parametric Magnetic Resonance Images", Journal of Medical Imaging 2018;5(4):044501. Abstract/PDF DOI PMID 30840739

  2. P. Bandi, O. Geessink, Q. Manson, M. van Dijk, M. Balkenhol, M. Hermsen, B.E. Bejnordi, B. Lee, K. Paeng, A. Zhong, Q. Li, F.G. Zanjani, S. Zinger, K. Fukuta, D. Komura, V. Ovtcharov, S. Cheng, S. Zeng, J. Thagaard, A.B. Dahl, H. Lin, H. Chen, L. Jacobsson, M. Hedlund, M. Cetin, E. Halici, H. Jackson, R. Chen, F. Both, J. Franke, H. Kusters-Vandevelde, W. Vreuls, P. Bult, B. van Ginneken, J. van der Laak and G. Litjens. "From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge", IEEE Transactions on Medical Imaging 2018;38:550-560. Abstract/PDF DOI PMID 30716025

  3. A. Baidoshvili, A. Bucur, J. van Leeuwen, J. van der Laak, P. Kluin and P.J. van Diest. "Evaluating the benefits of digital pathology implementation: time savings in laboratory logistics", Histopathology 2018;73:784-794. Abstract/PDF DOI PMID 29924891

  4. A. Baidoshvili, N. Stathonikos, G. Freling, J. Bart, N. 't Hart, J. van der Laak, J. Doff, B. van der Vegt, M. Kluin Philip and P.J. van Dies. "Validation of a whole-slide image-based teleconsultation network", Histopathology 2018;73:777-783. Abstract/PDF DOI PMID 29893996

  5. S. Balocco, F. Ciompi, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Assessment Of Intra-coronary Stent Location And Extension In Intravascular Ultrasound Sequences", Medical Physics 2018;46(2):484-493. Abstract/PDF DOI PMID 30383304

  6. C. Balta, R.W. Bouwman, I. Sechopoulos, M.J.M. Broeders, N. Karssemeijer, R.E. van Engen and W.J.H. Veldkamp. "A model observer study using acquired mammographic images of an anthropomorphic breast phantom", Medical Physics 2018;45:655-665. Abstract/PDF DOI PMID 29193129

  7. B.E. Bejnordi, G. Litjens and J.A. van der Laak. "Machine Learning Compared With Pathologist Assessment-Reply", Journal of the American Medical Association 2018;319:1726. PDF DOI PMID 29710158

  8. M.I. Bergkamp, J.G.J. Wissink, E.M.C. van Leijsen, M. Ghafoorian, D.G. Norris, E.J. van Dijk, B. Platel, A.M. Tuladhar and F.-E. de Leeuw. "Risk of Nursing Home Admission in Cerebral Small Vessel Disease", Stroke 2018;49:2659-2665. Abstract/PDF DOI PMID 30355195

  9. Z. Bian, J.-P. Charbonnier, J. Liu, D. Zhao, D.A. Lynch and B. van Ginneken. "Small airway segmentation in thoracic computed tomography scans: a machine learning approach", Physics in Medicine and Biology 2018;63:155024. Abstract/PDF DOI PMID 29995646

  10. A. Boueiz, Y. Chang, M.H. Cho, G.R. Washko, R. San Jose Estepar, R.P. Bowler, J.D. Crapo, D.L. DeMeo, J.G. Dy, E.K. Silverman, P.J. Castaldi and COPDGene Investigators. "Lobar Emphysema Distribution Is Associated With 5-Year Radiological Disease Progression", Chest 2018;153(1):65-76. Abstract/PDF DOI PMID 28943279

  11. A. Bria, C. Marrocco, L.R. Borges, M. Molinara, A. Marchesi, J.-J. Mordang, N. Karssemeijer and F. Tortorella. "Improving the Automated Detection of Calcifications using Adaptive Variance Stabilization", IEEE Transactions on Medical Imaging 2018;37(8):1857-1864. Abstract/PDF DOI PMID 29994062

  12. J.-P. Charbonnier, K. Chung, E.T. Scholten, E.M. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi. "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Nature Scientific Reports 2018;8:646. Abstract/PDF DOI PMID 29330380

  13. G. Chlebus, A. Schenk, J.H. Moltz, B. van Ginneken, H.K. Hahn and H. Meine. "Automatic liver tumor segmentation in CT with fully convolutional neural networks and object-based postprocessing", Nature Scientific Reports 2018;8:15497. Abstract/PDF DOI PMID 30341319

  14. K. Chung, F. Ciompi, J.M. Scholten, E. Th. Goo, M. Prokop, C. Jacobs, B. van Ginneken and C.M. Schaefer-Prokop. "Visual Discrimination of Screen-detected Persistent from Transient Subsolid Nodules: an Observer Study", PLoS One 2018;13:e0191874. Abstract/PDF DOI PMID 29438443

  15. K. Chung, O.M. Mets, P.K. Gerke, C. Jacobs, A.M. den Harder, E.T. Scholten, M. Prokop, P.A. de Jong, B. van Ginneken and C.M. Schaefer-Prokop. "Brock malignancy risk calculator for pulmonary nodules: validation outside a lung cancer screening population", Thorax 2018;73:857-863. Abstract/PDF DOI PMID 29777062

  16. M.U. Dalmis, S. Vreemann, T. Kooi, R.M. Mann, N. Karssemeijer and A. Gubern-Merida. "Fully automated detection of breast cancer in screening MRI using convolutional neural networks", Journal of Medical Imaging 2018;5:014502. Abstract/PDF DOI PMID 29340287

  17. B. Ehteshami Bejnordi, M. Mullooly, R.M. Pfeiffer, S. Fan, P.M. Vacek, D.L. Weaver, S. Herschorn, L.A. Brinton, B. van Ginneken, N. Karssemeijer, A.H. Beck, G.L. Gierach, J.A.W.M. van der Laak and M.E. Sherman. "Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies", Modern Pathology 2018;31(10):1502-1512. Abstract/PDF DOI PMID 29899550

  18. L.P. Hayden, M.H. Cho, B.A. Raby, T.H. Beaty, E.K. Silverman, C.P. Hersh and C. Investigators. "Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study", Respiratory Research 2018;19:209. Abstract/PDF DOI PMID 30373671

  19. T.L.A. van den Heuvel, D. de Bruijn, C.L. de Korte and B. van Ginneken. "Automated measurement of fetal head circumference using 2D ultrasound images", PLoS One 2018;13(8). Abstract/PDF DOI PMID 30138319

  20. T.L.A. van den Heuvel, D. de Bruijn, D. Moens-van de Moesdijk, A. Beverdam, B. van Ginneken and C.L. de Korte. "Comparison Study of Low-Cost Ultrasound Devices for Estimation of Gestational Age in Resource-Limited Countries", Ultrasound in Medicine and Biology 2018;44(11):2250-2260. Abstract/PDF DOI PMID 30093339

  21. H. van der Holst, A. Tuladhar, V. Zerbi, I. van Uden, K. de Laat, E. van Leijsen, M. Ghafoorian, B. Platel, M. Bergkamp, A. van Norden and D. Norris. "White matter changes and gait decline in cerebral small vessel disease", NeuroImage: Clinical 2018;17:731-738. Abstract/PDF DOI PMID 29270357

  22. G.E. Humpire Mamani, A. Setio, B. van Ginneken and C. Jacobs. "Efficient organ localization using multi-label convolutional neural networks in thorax-abdomen CT scans", Physics in Medicine and Biology 2018;63(8):085003. Abstract/PDF DOI PMID 29512516

  23. R.C. Koesoemadinata, K. Kranzer, R. Livia, N. Susilawati, J. Annisa, N.N.M. Soetedjo, R. Ruslami, R. Philipsen, B. van Ginneken, R.D. Soetikno, R. van Crevel, B. Alisjahbana and P.C. Hill. "Computer-assisted chest radiography reading for tuberculosis screening in people living with diabetes mellitus", International Journal of Tuberculosis and Lung Disease 2018;22:1088-1094. Abstract/PDF DOI PMID 30092877

  24. S.V. de Lange, M.F. Bakker, E.M. Monninkhof, P.H.M. Peeters, P.K. de Koekkoek-Doll, R.M. Mann, M.J.C.M. Rutten, R.H.C. Bisschops, J. Veltman, K.M. Duvivier, M.B.I. Lobbes, H.J. de Koning, N. Karssemeijer, R.M. Pijnappel, W.B. Veldhuis and C.H. van Gils. "Reasons for (non)participation in supplemental population-based MRI breast screening for women with extremely dense breasts", Clinical Radiology 2018;73(8):759e1-759e9. Abstract/PDF DOI PMID 29759590

  25. N. Lessmann, B. van Ginneken, M. Zreik, P.A. de Jong, B.D. de Vos, M.A. Viergever and I. Išgum. "Automatic calcium scoring in low-dose chest CT using deep neural networks with dilated convolutions", IEEE Transactions on Medical Imaging 2018;37(2):615-625. Abstract/PDF DOI arXiv PMID 29408789

  26. G. Litjens, P. Bandi, B. Ehteshami Bejnordi, O. Geessink, M. Balkenhol, P. Bult, A. Halilovic, M. Hermsen, R. van de Loo, R. Vogels, Q. Manson, N. Stathonikos, A. Baidoshvili, P. van Diest, C. Wauters, M. van Dijk and J. van der Laak. "1399 H&E-stained sentinel lymph node sections of breast cancer patients: the CAMELYON dataset", GigaScience 2018;7(6):1-8. Abstract/PDF DOI PMID 29860392

  27. L. Maier-Hein, M. Eisenmann, A. Reinke, S. Onogur, M. Stankovic, P. Scholz, T. Arbel, H. Bogunovic, A.P. Bradley, A. Carass, C. Feldmann, A.F. Frangi, P.M. Full, B. van Ginneken, A. Hanbury, K. Honauer, M. Kozubek, B.A. Landman, K. Marz, O. Maier, K. Maier-Hein, B.H. Menze, H. Muller, P.F. Neher, W. Niessen, N. Rajpoot, G.C. Sharp, K. Sirinukunwattana, S. Speidel, C. Stock, D. Stoyanov, A.A. Taha, F. van der Sommen, C.-W. Wang, M.-A. Weber, G. Zheng, P. Jannin and A. Kopp-Schneider. "Why rankings of biomedical image analysis competitions should be interpreted with care", Nature Communications 2018;9:5217. Abstract/PDF DOI PMID 30523263

  28. M. Meijs, F.-E. de Leeuw, H.D. Boogaarts, R. Manniesing and F.J.A. Meijer. "Circle of Willis collateral flow in carotid artery occlusion is depicted by 4D-CTA", World Neurosurgery 2018;114:421-426. Abstract/PDF DOI PMID 29530689

  29. J. Melendez, L. Hogeweg, C.I. Sanchez, R.H.H.M. Philipsen, R.W. Aldridge, A. Hayward, I. Abubakar, B. van Ginneken and A. Story. "Accuracy of an automated system for tuberculosis detection on chest radiographs in high-risk screening", International Journal of Tuberculosis and Lung Disease 2018;22(5):567-571. Abstract/PDF DOI PMID 29663963

  30. O.M. Mets, K. Chung, E.T. Scholten, W.B. Veldhuis, M. Prokop, B. van Ginneken, C.M. Schaefer-Prokop and P.A. de Jong. "Incidental perifissural nodules on routine chest computed tomography: lung cancer or not?", European Radiology 2018:1095-1101. Abstract/PDF DOI PMID 28986629

  31. O.M. Mets, K. Chung, P. Zanen, E.T. Scholten, W.B. Veldhuis, B. van Ginneken, M. Prokop, C.M. Schaefer-Prokop and P.A. de Jong. "In vivo growth of 60 non-screening detected lung cancers: a computed tomography study", European Respiratory Journal 2018;51:1702183. Abstract/PDF DOI PMID 29650547

  32. J.J. Mordang, A. Gubern-Merida, A. Bria, F. Tortorella, R.M. Mann, M.J.M. Broeders, G.J. den Heeten and N. Karssemeijer. "The importance of early detection of calcifications associated with breast cancer in screening", Breast Cancer Research and Treatment 2018;167:451-458. Abstract/PDF DOI PMID 29043464

  33. M.T.H. Oei, F.J.A. Meijer, J.-J. Mordang, E.J. Smit, A.J. Idema, B.M. Goraj, H.O.A. Laue, M. Prokop and R. Manniesing. "Observer Variability of Reference Tissue Selection for Relative Cerebral Blood Volume Measurements in Glioma Patients", European Radiology 2018;28:3902-3911. Abstract/PDF DOI PMID 29572637

  34. C. Reijnen, H. Kusters-Vandevelde, K. Abbink, P. Zusterzeel, A. van Herwaarden, J. van der Laak, L. Massuger, M. Snijders, J. Pijnenborg and J. Bulten. "Quantification of Leydig cells and stromal hyperplasia in the postmenopausal ovary of women with endometrial carcinoma", Human Pathology 2018. Abstract/PDF DOI PMID 30428390

  35. A. Rodriguez-Ruiz, A. Gubern-Merida, M. Imhof-Tas, S. Lardenoije, A.J.T. Wanders, I. Andersson, S. Zackrisson, K. Lang, M. Dustler, N. Karssemeijer, R.M. Mann and I. Sechopoulos. "One-view digital breast tomosynthesis as a stand-alone modality for breast cancer detection: do we need more?", European Radiology 2018;28:1938-1948. Abstract/PDF DOI PMID 29230524

  36. A. Rodriguez-Ruiz, J. Teuwen, S. Vreemann, R.W. Bouwman, R.E. van Engen, N. Karssemeijer, R.M. Mann, A. Gubern-Merida and I. Sechopoulos. "New reconstruction algorithm for digital breast tomosynthesis: better image quality for humans and computers", Acta Radiologica 2018;59:1051-1059. Abstract/PDF DOI PMID 29254355

  37. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "Classification of CT Pulmonary Opacities as Perifissural Nodules: Reader Variability", Radiology 2018;288(3):867-875. Abstract/PDF DOI PMID 29969076

  38. A. Schreuder, C. Schaefer-Prokop, E. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Lung cancer risk to personalise annual and biennial follow-up computed tomography screening", Thorax 2018;73(7):626-633. Abstract/PDF DOI PMID 29602813

  39. M. Silva, M. Prokop, C. Jacobs, G. Capretti, N. Sverzellati, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, C. Galeone, A. Marchiano and U. Pastorino. "Long-term Active Surveillance of Screening Detected Subsolid Nodules is a Safe Strategy to Reduce Overtreatment", Journal of Thoracic Oncology 2018;13:1454-1463. Abstract/PDF DOI PMID 30026071

  40. M. Silva, C.M. Schaefer-Prokop, C. Jacobs, G. Capretti, F. Ciompi, B. van Ginneken, U. Pastorino and N. Sverzellati. "Detection of Subsolid Nodules in Lung Cancer Screening: Complementary Sensitivity of Visual Reading and Computer-Aided Diagnosis", Investigative Radiology 2018;53(8):441-449. Abstract/PDF DOI PMID 29543693

  41. D. Tellez, M. Balkenhol, I. Otte-Holler, R. van de Loo, R. Vogels, P. Bult, C. Wauters, W. Vreuls, S. Mol, N. Karssemeijer, G. Litjens, J. van der Laak and F. Ciompi. "Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks", IEEE Transactions on Medical Imaging 2018;37(9):2126 - 2136. Abstract/PDF DOI PMID 29994086

  42. W. Venderink, M. de Rooij, M.J. Sedelaar, H.J. Huisman and J.J. Futterer. "Elastic versus rigid image registration in MRI-TRUS fusion prostate biopsy: a systematic review and meta-analysis", European Urology Focus 2018;4:219-227. Abstract/PDF DOI PMID 28753777

  43. F.G. Venhuizen, B. van Ginneken, B. Liefers, F. van Asten, V. Schreur, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sanchez. "A Deep Learning Approach for Detection and Quantification of Intraretinal Cystoid Fluid in Multivendor Optical Coherence Tomography", Biomedical Optics Express 2018;9(4):1545-1569. Abstract/PDF DOI PMID 29675301

  44. S. Vreemann, A. Gubern-Merida, C. Borelli, P. Bult, N. Karssemeijer and R.M. Mann. "The correlation of background parenchymal enhancement in the contralateral breast with patient and tumor characteristics of MRI-screen detected breast cancers", PLoS One 2018;13:e0191399. Abstract/PDF DOI PMID 29351560

  45. S. Vreemann, A. Gubern-Merida, S. Lardenoije, P. Bult, N. Karssemeijer, K. Pinker and R.M. Mann. "The frequency of missed breast cancers in women participating in a high-risk MRI screening program", Breast Cancer Research and Treatment 2018;169:323-331. Abstract/PDF DOI PMID 29383629

  46. S. Vreemann, A. Gubern-Merida, M.S. Schlooz-Vries, P. Bult, C.H. van Gils, N. Hoogerbrugge, N. Karssemeijer and R.M. Mann. "Influence of Risk Category and Screening Round on the Performance of an MR Imaging and Mammography Screening Program in Carriers of the BRCA Mutation and Other Women at Increased Risk", Radiology 2018;286:443-451. Abstract/PDF DOI PMID 29040037

  47. S. Vreemann, J.C.M. van Zelst, M. Schlooz-Vries, P. Bult, N. Hoogerbrugge, N. Karssemeijer, A. Gubern-Merida and R.M. Mann. "The added value of mammography in different age-groups of women with and without BRCA mutation screened with breast MRI", Breast Cancer Research 2018;20:84. Abstract/PDF DOI PMID 30075794

  48. S.M.A. Zaidi, S.S. Habib, B. van Ginneken, R.A. Ferrand, J. Creswell, S. Khowaja and A. Khan. "Evaluation of the diagnostic accuracy of Computer-Aided Detection of tuberculosis on Chest radiography among private sector patients in Pakistan", Nature Scientific Reports 2018;8:12339. Abstract/PDF DOI PMID 30120345

  49. J.C.M. van Zelst and R.M. Mann. "Automated Three-dimensional Breast US for Screening: Technique, Artifacts, and Lesion Characterization", Radiographics 2018;38:663-683. Abstract/PDF DOI PMID 29624482

  50. J.C.M. van Zelst, T. Tan, P. Clauser, A. Domingo, M.D. Dorrius, D. Drieling, M. Golatta, F. Gras, M. de Jong, R. Pijnappel, M.J.C.M. Rutten, N. Karssemeijer and R.M. Mann. "Dedicated computer-aided detection software for automated 3D breast ultrasound; an efficient tool for the radiologist in supplemental screening of women with dense breasts", European Radiology 2018;28:2996-3006. Abstract/PDF DOI PMID 29417251

  51. J.C.M. van Zelst, S. Vreemann, H.-J. Witt, A. Gubern-Merida, M.D. Dorrius, K. Duvivier, S. Lardenoije-Broker, M.B.I. Lobbes, C. Loo, W. Veldhuis, J. Veltman, D. Drieling, N. Karssemeijer and R.M. Mann. "Multireader Study on the Diagnostic Accuracy of Ultrafast Breast Magnetic Resonance Imaging for Breast Cancer Screening", Investigative Radiology 2018;53(10):579-586. Abstract/PDF DOI PMID 29944483


Preprints

  1. G. Aresta, C. Jacobs, T. Araujo, A. Cunha, I. Ramos, B. van Ginneken and A. Campilho. "iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network", arXiv:1811.12789 2018. Abstract

  2. D. Belli, S. Hu, E. Sogancioglu and B. van Ginneken. "Chest X-Rays Image Inpainting with Context Encoders", arXiv:1812.00964 2018. Abstract

  3. A. de Gelder and H. Huisman. "Autoencoders for Multi-Label Prostate MR Segmentation", arXiv:1806.08216 2018. Abstract

  4. A. Hering, S. Kuckertz, S. Heldmann and M. Heinrich. "Enhancing Label-Driven Deep Deformable Image Registration with Local Distance Metrics for State-of-the-Art Cardiac Motion Tracking", arXiv:1812.01859 2018. Abstract/PDF arXiv

  5. S. Kazeminia, C. Baur, A. Kuijper, B. van Ginneken, N. Navab, S. Albarqouni and A. Mukhopadhyay. "GANs for Medical Image Analysis", arXiv:1809.06222 2018. Abstract

  6. G. Mooij, I. Bagulho and H. Huisman. "Automatic segmentation of prostate zones", arXiv:1806.07146 2018. Abstract

  7. T. de Moor, A. Rodriguez-Ruiz, R. Mann and J. Teuwen. "Automated soft tissue lesion detection and segmentation in digital mammography using a u-net deep learning network", arXiv:1802.06865 2018. Abstract

  8. E. Sogancioglu, S. Hu, D. Belli and B. van Ginneken. "Chest X-ray Inpainting with Deep Generative Models", arXiv:1809.01471 2018. Abstract

  9. J. Teuwen and P. Urbach. "On Maximum Focused Electric Energy in Bounded Regions", arXiv:1801.02450 2018. Abstract


Papers in conference proceedings

  1. G. Aresta, T. Araujo, C. Jacobs, B. van Ginneken, A. Cunha, I. Ramos and A. Campilho. "Towards an automatic lung cancer screening system in low dose computed tomography", in: MICCAI Workshop: Thoracic Image Analysis, volume 11040 of Lecture Notes in Computer Science, 2018. Abstract/PDF DOI

  2. J.-M. Bokhorst, L. Rijstenberg, D. Goudkade, I. Nagtegaal, J. van der Laak and F. Ciompi. "Automatic Detection of Tumor Budding in Colorectal Carcinoma with Deep Learning", in: Computational Pathology and Ophthalmic Medical Image Analysis, 2018. Abstract/PDF DOI

  3. W. Bulten, C.A.H. van de Kaa, J. van der Laak and G.J.S. Litjens. "Automated segmentation of epithelial tissue in prostatectomy slides using deep learning", in: Medical Imaging, volume 10581 of Proceedings of the SPIE, 2018, page 105810S. Abstract/PDF DOI

  4. W. Bulten and G. Litjens. "Unsupervised Prostate Cancer Detection on H&E using Convolutional Adversarial Autoencoders", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  5. D. Geijs, M. Intezar, J. van der Laak and G. Litjens. "Automatic color unmixing of IHC stained whole slide images", in: Medical Imaging, volume 10581 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  6. M. Ghafoorian, J. Teuwen, R. Manniesing, F.-E. de Leeuw, B. van Ginneken, N. Karssemeijer and B. Platel. "Student Beats the Teacher: Deep Neural Networks for Lateral Ventricles Segmentation in Brain MR", in: Medical Imaging, volume 10574 of Proceedings of the SPIE, 2018, page 105742U. Abstract/PDF DOI arXiv

  7. E. Gibson, Yipeng, H.N. Ghavami, H.U. Ahmed, C. Moore, M. Emberton, H. Huisman and D. Barratt. "Inter-site variability in prostate segmentation accuracy using deep learning", in: Medical Image Computing and Computer-Assisted Intervention, 2018. Abstract/PDF DOI

  8. C. Gonzalez-Gonzalo, B. Liefers, B. van Ginneken and C.I. Sanchez. "Improving weakly-supervised lesion localization with iterative saliency map refinement", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  9. Y.B. Hagos, A. Gubern-Merida and J. Teuwen. "Improving Breast Cancer Detection using Symmetry Information with Deep Learning", in: Breast Image Analysis (BIA), 2018. Abstract/PDF DOI

  10. S.C. van de Leemput, A. Patel and R. Manniesing. "Full Volumetric Brain Tissue Segmentation in Non-contrast CT using Memory Efficient Convolutional LSTMs", in: Medical Imaging meets NeurIPS, 2018. Abstract/PDF URL

  11. S.C. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Stacked Bidirectional Convolutional LSTMs for 3D Non-contrast CT Reconstruction from Spatiotemporal 4D CT", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  12. S.C. van de Leemput, J. Teuwen and R. Manniesing. "MemCNN: a Framework for Developing Memory Efficient Deep Invertible Networks", in: International Conference on Learning Representations, 2018. Abstract/PDF URL

  13. N. Lessmann, B. van Ginneken and I. Išgum. "Iterative convolutional neural networks for automatic vertebra identification and segmentation in CT images", in: Medical Imaging, volume 10574 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  14. N. Lessmann, B. van Ginneken, P.A. de Jong and I. Išgum. "Iterative fully convolutional neural networks for automatic vertebra segmentation", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  15. M. Meijs and R. Manniesing. "Artery and Vein Segmentation of the Cerebral Vasculature in 4D CT using a 3D Fully Convolutional Neural Network", in: Medical Imaging, volume 10575 of Proceedings of the SPIE, 2018, page 105751Q. Abstract/PDF DOI

  16. T. de Moor, A. Rodriguez-Ruiz, R. Mann and J. Teuwen. "Automated soft tissue lesion detection and segmentation in digital mammography using a u-net deep learning network", in: International Workshop on Breast Imaging, 2018. Abstract/PDF arXiv

  17. A. Patel and R. Manniesing. "A convolutional neural network for intracranial hemorrhage detection in non-contrast CT", in: Medical Imaging, volume 10575 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  18. M. van Rijthoven, Z. Swiderska-Chadaj, K. Seeliger, J. van der Laak and F. Ciompi. "You Only Look on Lymphocytes Once", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  19. A. Rodriguez-Ruiz, J. Teuwen, K. Chung, N. Karssemeijer, M. Chevalier, A. Gubern-Merida and I. Sechopoulos. "Pectoral muscle segmentation in breast tomosynthesis with deep learning", in: Medical Imaging of Proceedings of the SPIE, 2018. Abstract DOI

  20. K. Standvoss, T. Crijns, L. Goerke, D. Janssen, S. Kern, T. van Niedek, J. van Vugt, N.A. Burgos, E.J. Gerritse, J. Mol, D. van de Vooren, M. Ghafoorian, T.L. van den Heuvel and R. Manniesing. "Cerebral Microbleed Detection in Traumatic Brain Injury Patients using 3D Convolutational Neural Networks", in: Medical Imaging, volume 10575 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  21. Z. Swiderska-Chadaj, H. Pinckaers, M. van Rijthoven, M. Balkenhol, M. Melnikova, O. Geessink, Q. Manson, G. Litjens, J. van der Laak and F. Ciompi. "Convolutional Neural Networks for Lymphocyte detection in Immunohistochemically Stained Whole-Slide Images", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  22. D. Tellez, M. Balkenhol, N. Karssemeijer, G. Litjens, J. van der Laak and F. Ciompi. "H&E stain augmentation improves generalization of convolutional networks for histopathological mitosis detection", in: Medical Imaging, volume 10581 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  23. D. Tellez, J. van der Laak and F. Ciompi. "Gigapixel Whole-Slide Image Classification Using Unsupervised Image Compression And Contrastive Training", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL


Abstracts

  1. A.W. van der Eerden, T.L. van den Heuvel, B.H. Geurts, B. Platel, T.V. Vyveree, L. van den Hauwee, T.M. Andriessen, B.M. Goraj and R. Manniesing. "Automatic versus human detection of traumatic cerebral microbleeds on susceptibility weighted imaging", in: European Congress of Radiology, 2018. Abstract

  2. B. van Ginneken. "Deep Machine Learning for Screening LDCT", in: Journal of Thoracic Oncology, 2018. Abstract/PDF

  3. B. van Ginneken. "Real-Life Artificial Intelligence Applications", in: Journal of the Belgian Society of Nephrology, 2018. Abstract/PDF DOI

  4. M. Hall, A.A.A. Setio, S. Sheridan, M. Sproule, M. Williams, E.T. Scholten, C. Jacobs, B. Van Ginneken and G. Roditi. "Computer aided detection (CAD) and scoring of lung nodules in a Scottish lung cancer screening programme", in: European Congress of Radiology, 2018. Abstract DOI

  5. M. Hermsen, T. de Bel, M. den Boer, E. Steenbergen, J. Kers, S. Florquin, B. Smeets, L. Hilbrands and J. van der Laak. "Glomerular detection, segmentation and counting in PAS-stained histopathological slides using deep learning", in: Dutch Federation of Nephrology (NfN) Fall Symposium, 2018. Abstract/PDF

  6. K. Koschmieder, A. van der Eerden, B. van Ginneken and R. Manniesing. "Brain Extraction in Susceptibility-Weighted MR Images using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  7. F.J. Meijer, P.W. Willems, M. Meijs and R. Manniesing. "Color-mapping visualization of 4D-CTA in neurovascular disease", in: European Society of Neuroradiology, 2018. Abstract/PDF

  8. M. Meijs, A. Patel, S.C. van de Leemput, B. van Ginneken, M. Prokop and R. Manniesing. "Fast, Robust and Accurate Segmentation of the Complete Cerebral Vasculature in 4D-CTA using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  9. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "What is a perifissural nodule? Low inter-observer agreement in NLST data", in: European Societies of Cardiovascular Radiology and Thoracic Imaging joint meeting, 2018. Abstract

  10. A. Schreuder, C. Jacobs, L. Gallardo-Estrella, C.M. Schaefer-Prokop, W. Fukumoto, M. Prokop and B. van Ginneken. "Normalized emphysema score progression: An improved CT biomarker for mortality", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract

  11. A. Schreuder, C. Jacobs, N. Lessmann, E.T. Scholten, I. Isgum, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Improved Lung Cancer and Mortality Prediction Accuracy Using Survival Models Based on Semi-Automatic CT Image Measurements", in: World Conference on Lung Cancer, 2018. Abstract

  12. A. Schreuder, C.M. Schaefer-Prokop, E.T. Scholten, D. Lynch, J.-P. Charbonnier and C. Jacobs. "Perifissural nodule count as a biomarker for COPD GOLD stages and emphysema measurements?", in: European Societies of Cardiovascular Radiology and Thoracic Imaging Joint Meeting, 2018. Abstract

  13. E. Smeets, J. Teuwen, J. van der Laak, M. Gotthardt, F. Ciompi and E. Aarntzen. "Tumor heterogeneity as a PET-biomarker predicts overall survival of pancreatic cancer patients", in: European Society for Molecular Imaging, 2018. Abstract


Theses

  1. T.A. Ableef. "Malignancy estimation of Pulmonary Nodules using Multi-View Multi-Time Point Convolutional Neural Networks", Masters thesis, University of Girona (MAIA master program), 2018. Abstract/PDF

  2. K. Chung. "Malignancy risk estimation of subsolid nodules", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL

  3. M. Ghafoorian. "Machine Learning for Quantification of Small Vessel Disease Imaging Biomarkers", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL

  4. C. Kamphuis. "Automatic Segmentation of Retinal Layers in Optical Coherence Tomography using Deep Learning Techniques", Masters thesis, Radboud Universiteit / Radboud UMC, 2018. PDF

  5. J. van Kleef. "Robust and accurate cerebral hemisphere segmentation in non-contrast CT using a 2.5D Dense U-Net", Masters thesis, Radboud University / Radboud UMC, 2018. Abstract/PDF

  6. T. Kooi. "Computer aided diagnosis of breast cancer in mammography using deep neural networks", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL

  7. J.-J. Mordang. "Towards an independent observer of screening mammograms: detection of calcifications", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL

  8. A.A.A. Setio. "Computer-aided diagnosis in thoracic CT scans for lung cancer screening", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL

  9. S. Vreemann. "Breast MRI for screening: evaluation of clinical practice and future perspectives", PhD thesis, Radboud University, Nijmegen, 2018. Abstract/PDF URL


Other publications

  1. D. Stoyanov, Z. Taylor, B. Kainz, G. Maicas, R. Beichel, A. Martel, L. Maier-Hein, B. Kanwal, T. Vercauteren, O. Ozan, G. Carneiro, A.P. Bradley, J. Nascimento, H. Min, M.S. Brown, C. Jacobs, B. Lassen-Schmidt, K. Mori, J. Petersen, R.S.J. Estepar, A. Schmidt-Richberg and C. Veiga. "Image Analysis for Moving Organ, Breast and Thoracic Images", 2018. Abstract/PDF DOI


2017

Papers in international journals

  1. B.E. Bejnordi, G. Zuidhof, M. Balkenhol, M. Hermsen, P. Bult, B. van Ginneken, N. Karssemeijer, G. Litjens and J. van der Laak. "Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images", Journal of Medical Imaging 2017;4:044504. Abstract/PDF DOI PMID 29285517

  2. A. Castells-Nobau, B. Nijhof, I. Eidhof, L. Wolf, J.M. Scheffer-de Gooyert, I. Monedero, L. Torroja, J.A.W.M. van der Laak and A. Schenck. "Two Algorithms for High-throughput and Multi-parametric Quantification of Drosophila Neuromuscular Junction Morphology", JoVE 2017;123:1-13. Abstract/PDF DOI PMID 28518121

  3. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi. "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis 2017;36:52-60. Abstract/PDF DOI PMID 27842236

  4. K. Chung, C. Jacobs, E.T. Scholten, J.M. Goo, H. Prosch, N. Sverzellati, F. Ciompi, O.M. Mets, P.K. Gerke, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Lung-RADS Category 4X: Does It Improve Prediction of Malignancy in Subsolid Nodules?", Radiology 2017;284(1):264-271. Abstract/PDF DOI PMID 28339311

  5. K. Chung, C. Jacobs, E.T. Scholten, O.M. Mets, I. Dekker, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Malignancy estimation of Lung-RADS criteria for subsolid nodules on CT: accuracy of low and high risk spectrum when using NLST nodules", European Radiology 2017;27:4672-4679. Abstract/PDF DOI PMID 28439653

  6. F. Ciompi, K. Chung, S.J. van Riel, A.A.A. Setio, P.K. Gerke, C. Jacobs, E.T. Scholten, C.M. Schaefer-Prokop, M.M.W. Wille, A. Marchiano, U. Pastorino, M. Prokop and B. van Ginneken. "Towards automatic pulmonary nodule management in lung cancer screening with deep learning", Nature Scientific Reports 2017(46479). Abstract DOI arXiv PMID 28880026

  7. J.G. Cohen, H. Kim, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee, J.M. Goo and C.M. Park. "Comparison of the effects of model-based iterative reconstruction and filtered back projection algorithms on software measurements in pulmonary subsolid nodules", European Radiology 2017;27:3266-3274. Abstract/PDF DOI PMID 28058482

  8. M.U. Dalmis, G. Litjens, K. Holland, A. Setio, R. Mann, N. Karssemeijer and A. Gubern-Merida. "Using deep learning to segment breast and fibroglandular tissue in MRI volumes", Medical Physics 2017;44:533-546. Abstract/PDF DOI PMID 28035663

  9. A. Devaraj, B. van Ginneken, A. Nair and D. Baldwin. "Use of Volumetry for Lung Nodule Management: Theory and Practice", Radiology 2017;284:630-644. Abstract/PDF DOI PMID 28825886

  10. B. Ehteshami Bejnordi, M. Veta, P.J. van Diest, B. van Ginneken, N. Karssemeijer, G. Litjens, J.A.W.M. van der Laak, the CAMELYON16 Consortium, M. Hermsen, Q.F. Manson, M. Balkenhol, O. Geessink, N. Stathonikos, M.C. van Dijk, P. Bult, F. Beca, A.H. Beck, D. Wang, A. Khosla, R. Gargeya, H. Irshad, A. Zhong, Q. Dou, Q. Li, H. Chen, H.-J. Lin, P.-A. Heng, C. Haß, E. Bruni, Q. Wong, U. Halici, M. Ü. Öner, R. Cetin-Atalay, M. Berseth, V. Khvatkov, A. Vylegzhanin, O. Kraus, M. Shaban, N. Rajpoot, R. Awan, K. Sirinukunwattana, T. Qaiser, Y.-W. Tsang, D. Tellez, J. Annuscheit, P. Hufnagl, M. Valkonen, K. Kartasalo, L. Latonen, P. Ruusuvuori, K. Liimatainen, S. Albarqouni, B. Mungal, A. George, S. Demirci, N. Navab, S. Watanabe, S. Seno, Y. Takenaka, H. Matsuda, H. Ahmady Phoulady, V. Kovalev, A. Kalinovsky, V. Liauchuk, G. Bueno, M.M. Fernandez-Carrobles, I. Serrano, O. Deniz, D. Racoceanu and R. Venâncio. "Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer", Journal of the American Medical Association 2017;318:2199-2210. Abstract/PDF DOI PMID 29234806

  11. L. Gallardo Estrella, E. Pompe, J.-M. Kuhnigk, D.A. Lynch, S.P. Bhatt, B. van Ginneken and E.M. van Rikxoort. "Computed tomography quantification of tracheal abnormalities in COPD and their influence on airflow limitation", Medical Physics 2017;44:3594-3603. Abstract/PDF DOI PMID 28423189

  12. L. Gallardo-Estrella, E. Pompe, P.A. de Jong, C. Jacobs, E.M. van Rikxoort, M. Prokop, C.I. Sanchez and B. van Ginneken. "Normalized emphysema scores on low dose CT: Validation as an imaging biomarker for mortality", PLoS One 2017;12:e0188902. Abstract/PDF DOI PMID 29227997

  13. M. Ghafoorian, N. Karssemeijer, T. Heskes, M. Bergkamp, J. Wissink, J. Obels, K. Keizer, F.-E. de Leeuw, B. v. Ginneken, E. Marchiori and B. Platel. "Deep multi-scale location-aware 3D convolutional neural networks for automated detection of lacunes of presumed vascular origin", NeuroImage: Clinical 2017;14:391-399. Abstract/PDF DOI PMID 28271039

  14. M. Ghafoorian, N. Karssemeijer, T. Heskes, I. van Uden, C.I. Sanchez, G. Litjens, F.-E. de Leeuw, B. van Ginneken, E. Marchiori and B. Platel. "Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities", Nature Scientific Reports 2017;7(1):5110. Abstract/PDF DOI arXiv PMID 28698556

  15. E. Gibson, Y. Hu, H. Huisman and D. Barratt. "Designing image segmentation studies: statistical power, sample size and reference standard quality", Medical Image Analysis 2017;42:44-59. Abstract/PDF DOI PMID 28772163

  16. B. van Ginneken. "Fifty years of computer analysis in chest imaging: rule-based, machine learning, deep learning", Radiological Physics and Technology 2017;10(1):23-32. Abstract/PDF DOI PMID 28211015

  17. T.L.A. van den Heuvel, D.J. Graham, K.J. Smith, C.L. de Korte and J.A. Neasham. "Development of a Low-Cost Medical Ultrasound Scanner Using a Monostatic Synthetic Aperture", IEEE Transactions on Biomedical Circuits and Systems 2017;11(4):849-857. Abstract/PDF DOI PMID 28715339

  18. L. Hogeweg, C.I. Sanchez, P. Maduskar, R.H.H.M. Philipsen and B. van Ginneken. "Fast and effective quantification of symmetry in medical images for pathology detection: application to chest radiography", Medical Physics 2017;44(6):2242-2256. Abstract/PDF DOI PMID 28134985

  19. K. Holland, C.H. van Gils, R.M. Mann and N. Karssemeijer. "Quantification of masking risk in screening mammography with volumetric breast density maps", Breast Cancer Research and Treatment 2017;162(3):541-548. Abstract/PDF DOI PMID 28161786

  20. K. Holland, A. Gubern-Merida, R.M. Mann and N. Karssemeijer. "Optimization of volumetric breast density estimation in digital mammograms", Physics in Medicine and Biology 2017;62(9):3779-3797. Abstract/PDF DOI PMID 28230532

  21. K. Holland, I. Sechopoulos, R.M. Mann, G.J. den Heeten, C.H. van Gils and N. Karssemeijer. "Influence of breast compression pressure on the performance of population-based mammography screening", Breast Cancer Research 2017;19(1):126. Abstract/PDF DOI PMID 29183348

  22. T. Kooi, B. van Ginneken, N. Karssemeijer and A. den Heeten. "Discriminating solitary cysts from soft tissue lesions in mammography using a pretrained deep convolutional neural network", Medical Physics 2017;44:1017-1027. Abstract/PDF DOI PMID 28094850

  23. T. Kooi and N. Karssemeijer. "Classifying Symmetrical Differences and Temporal Change in Mammography Using Deep Neural Networks", Journal of Medical Imaging 2017;4(4):International Society for Optics. Abstract/PDF DOI PMID 29021992

  24. T. Kooi, G. Litjens, B. van Ginneken, A. Gubern-Merida, C.I. Sanchez, R. Mann, A. den Heeten and N. Karssemeijer. "Large scale deep learning for computer aided detection of mammographic lesions", Medical Image Analysis 2017;35:303-312. Abstract/PDF DOI PMID 27497072

  25. S. Laban, G. Giebel, N. Klümper, A. Schröck, J. Doescher, G. Spagnoli, J. Thierauf, M. Theodoraki, R. Remark, S. Gnjatic, R. Krupar, A. Sikora, G. Litjens, N. Grabe, G. Kristiansen, F. Bootz, P. Schuler, C. Brunner, J. Brägelmann, T. Hoffmann and S. Perner. "MAGE expression in head and neck squamous cell carcinoma primary tumors, lymph node metastases and respective recurrences: implications for immunotherapy", Oncotarget 2017;8:14719-14735. Abstract/PDF DOI PMID 28146422

  26. B.C. Lassen-Schmidt, J.-M. Kuhnigk, O. Konrad, B. van Ginneken and E. van Rikxoort. "Fast interactive segmentation of the pulmonary lobes from thoracic computed tomography data", Physics in Medicine and Biology 2017;62(16):6649-6665. Abstract/PDF DOI PMID 28570264

  27. E.M. van Leijsen, I.W. van Uden, M. Ghafoorian, M.I. Bergkamp, V. Lohner, E.C. Kooijmans, H.M. van der Holst, A.M. Tuladhar, D.G. Norris, E.J. van Dijk, L.C. Rutten-Jacobs, B. Platel, C.J. Klijn and F.-E. de Leeuw. "Nonlinear temporal dynamics of cerebral small vessel disease The RUN DMC study", Neurology 2017;89(15):1569-1577. Abstract/PDF DOI PMID 28878046

  28. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, S. Fauser, T. Theelen and C.I. Sanchez. "Automatic detection of the foveal center in optical coherence tomography", Biomedical Optics Express 2017;8(11):5160-5178. Abstract/PDF DOI PMID 29188111

  29. G. Litjens, T. Kooi, B. Ehteshami Bejnordi, A.A.A. Setio, F. Ciompi, M. Ghafoorian, J. van der Laak, B. van Ginneken and C.I. Sanchez. "A Survey on Deep Learning in Medical Image Analysis", Medical Image Analysis 2017;42:60-88. Abstract/PDF DOI arXiv PMID 28778026

  30. R. Manniesing, M.T. Oei, L.J. Oostveen, J. Melendez, E.J. Smit, B. Platel, C.I. Sanchez, F.J. Meijer, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D Computed Tomography", Nature Scientific Reports 2017;7(119). Abstract/PDF DOI PMID 28273920

  31. M. Meijs, A. Patel, S. van de Leemput, M. Prokop, E.J. van Dijk, F.-E. de Leeuw, F.J.A. Meijer, B. van Ginneken and R. Manniesing. "Robust Segmentation of the Full Cerebral Vasculature in 4D CT Images of Suspected Stroke Patients", Nature Scientific Reports 2017;7. Abstract/PDF DOI PMID 29142240

  32. J. Melendez, R.H.H.M. Philipsen, P. Chanda-Kapata, V. Sunkutu, N. Kapata and B. van Ginneken. "Automatic versus human reading of chest X-rays in the Zambia National Tuberculosis Prevalence Survey", International Journal of Tuberculosis and Lung Disease 2017;21:880-886. Abstract/PDF DOI PMID 28786796

  33. T. Mertzanidou, J.H. Hipwell, S. Reis, D.J. Hawkes, B.E. Bejnordi, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, M. Hermsen, P. Bult and R. Mann. "3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging", Medical Physics 2017;44:935-948. Abstract/PDF DOI PMID 28064435

  34. O.M. Mets, P.A. de Jong, E.T. Scholten, K. Chung, B. van Ginneken and C.M. Schaefer-Prokop. "Subsolid pulmonary nodule morphology and associated patient characteristics in a routine clinical population", European Radiology 2017;27(2):689-696. Abstract/PDF DOI PMID 27255399

  35. J.-J. Mordang, A. Gubern-Merida, A. Bria, F. Tortorella, G. den Heeten and N. Karssemeijer. "Improving computer-aided detection assistance in breast cancer screening by removal of obviously false-positive findings", Medical Physics 2017;44(4):1390-1401. Abstract/PDF DOI PMID 28182277

  36. N. Moriakov. "On Effective Birkhoff's Ergodic Theorem for Computable Actions of Amenable Groups", Theory of Computing Systems 2017. PDF DOI

  37. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Interleaving cerebral CT perfusion with neck CT angiography. Part II: clinical implementation and image quality", European Radiology 2017;27:2411-2418. Abstract/PDF DOI PMID 27651144

  38. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, M. Prokop and R. Manniesing. "Interleaving cerebral CT perfusion with neck CT angiography part I. Proof of concept and accuracy of cerebral perfusion values", European Radiology 2017;27:2649-2656. Abstract/PDF DOI PMID 27718078

  39. A. Patel, B. van Ginneken, F.J.A. Meijer, E.J. van Dijk, M. Prokop and R. Manniesing. "Robust Cranial Cavity Segmentation in CT and CT Perfusion Images of Trauma and Suspected Stroke Patients", Medical Image Analysis 2017;36:216-228. Abstract/PDF DOI PMID 28011374

  40. E. Pompe, P.A. de Jong, D.A. Lynch, N. Lessmann, I. Išgum, B. van Ginneken, J.-W. Lammers and F.A. Mohamed Hoesein. "Computed tomographic findings in subjects who died from respiratory disease in the National Lung Screening Trial", European Respiratory Journal 2017;49:1601814. Abstract/PDF DOI PMID 28424361

  41. S.J. van Riel, F. Ciompi, C. Jacobs, M.M. Winkler Wille, E.T. Scholten, M. Naqibullah, S. Lam, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of screen-detected nodules at baseline CT: comparison of the PanCan model, Lung-RADS and NCCN guidelines", European Radiology 2017;27(10):4019-4029. Abstract/PDF DOI PMID 28293773

  42. S.J. van Riel, F. Ciompi, M.M. Winkler Wille, A. Dirksen, S. Lam, E.T. Scholten, S.E. Rossi, N. Sverzellati, M. Naqibullah, R. Wittenberg, M.C. Hovinga-de Boer, M. Snoeren, L. Peters-Bax, O. Mets, M. Brink, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of pulmonary nodules in screening CTs: Comparison between a computer model and human observers", PLoS One 2017;12:e0185032. Abstract/PDF DOI PMID 29121063

  43. A.A.A. Setio, A. Traverso, T. de Bel, M.S.N. Berens, C. v. d. Bogaard, P. Cerello, H. Chen, Q. Dou, M.E. Fantacci, B. Geurts, R. v. d. Gugten, P.A. Heng, B. Jansen, M.M.J. de Kaste, V. Kotov, J.Y.-H. Lin, J.T.M.C. Manders, A. Sonora-Mengana, J.C. Garcia-Naranjo, E. Papavasileiou, M. Prokop, M. Saletta, C.M. Schaefer-Prokop, E.T. Scholten, L. Scholten, M.M. Snoeren, E.L. Torres, J. Vandemeulebroucke, N. Walasek, G.C.A. Zuidhof, B. v. Ginneken and C. Jacobs. "Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: The LUNA16 challenge", Medical Image Analysis 2017;42:1-13. Abstract/PDF DOI arXiv PMID 28732268

  44. W. Venderink, M. van der Leest, A. van Luijtelaar, W.J. van de Ven, J.J. Futterer, J.M. Sedelaar and H.J. Huisman. "Retrospective comparison of direct in-bore magnetic resonance imaging (MRI) guided biopsy and fusion guided biopsy in patients with MRI lesions which are likely or highly likely to be clinically significant prostate cancer", World Journal of Urology 2017;35(12):1849-1855. Abstract/PDF DOI PMID 28871396

  45. F.G. Venhuizen, B. van Ginneken, F. van Asten, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Automated Staging of Age-Related Macular Degeneration Using Optical Coherence Tomography", Investigative Ophthalmology and Visual Science 2017;58(4):2318-2328. Abstract/PDF DOI PMID 28437528

  46. F.G. Venhuizen, B. van Ginneken, B. Liefers, Schreur, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Robust Total Retina Thickness Segmentation in Optical Coherence Tomography Images using Convolutional Neural Networks", Biomedical Optics Express 2017;8(7):3292-3316. Abstract/PDF DOI PMID 28717568

  47. S. Vreemann, A. Rodriguez-Ruiz, D. Nickel, L. Heacock, L. Appelman, J. van Zelst, N. Karssemeijer, E. Weiland, M. Maas, L. Moy, B. Kiefer and R.M. Mann. "Compressed Sensing for Breast MRI: Resolving the Trade-Off Between Spatial and Temporal Resolution", Investigative Radiology 2017;52:574-582. Abstract/PDF DOI PMID 28463932

  48. J.O. Wanders, K. Holland, N. Karssemeijer, P.H. Peeters, W.B. Veldhuis, R.M. Mann and C.H. van Gils. "The effect of volumetric breast density on the risk of screen-detected and interval breast cancers: a cohort study", Breast Cancer Research 2017;19(1):67. Abstract/PDF DOI PMID 28583146

  49. J.O.P. Wanders, K. Holland, W.B. Veldhuis, R.M. Mann, R.M. Pijnappel, P.H.M. Peeters, C.H. van Gils and N. Karssemeijer. "Volumetric breast density affects performance of digital screening mammography", Breast Cancer Research and Treatment 2017;162(1):95-103. Abstract/PDF DOI PMID 28012087

  50. U. Yousaf-Khan, C. van der Aalst, P.A. de Jong, M. Heuvelmans, E. Scholten, J. Walter, K. Nackaerts, H. Groen, R. Vliegenthart, K. Ten Haaf, M. Oudkerk and H. de Koning. "Risk stratification based on screening history: the NELSON lung cancer screening study", Thorax 2017;72:819-824. Abstract/PDF DOI PMID 28360223

  51. J.C.M. van Zelst, M. Balkenhol, T. Tan, M. Rutten, M. Imhof-Tas, P. Bult, N. Karssemeijer and R.M. Mann. "Sonographic Phenotypes of Molecular Subtypes of Invasive Ductal Cancer in Automated 3-D Breast Ultrasound", Ultrasound in Medicine and Biology 2017;43:1820-1828. Abstract/PDF DOI PMID 28576620

  52. J.C.M. van Zelst, R.D.M. Mus, G. Woldringh, M.J.C.M. Rutten, P. Bult, S. Vreemann, M. de Jong, N. Karssemeijer, N. Hoogerbrugge and R.M. Mann. "Surveillance of Women with the BRCA1 or BRCA2 Mutation by Using Biannual Automated Breast US, MR Imaging, and Mammography", Radiology 2017;285:376-388. Abstract/PDF DOI PMID 28609204


Papers in conference proceedings

  1. P. Bandi, R. van de Loo, M. Intezar, D. Geijs, F. Ciompi, B. van Ginneken, J. van der Laak and G. Litjens. "Comparison of Different Methods for Tissue Segmentation In Histopathological Whole-Slide Images", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 591-595. Abstract/PDF DOI arXiv

  2. B.E. Bejnordi, J. Lin, B. Glass, M. Mullooly, G. Gierach, M. Sherman, N. Karssemeijer, J.A. van der Laak and A. Beck. "Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 929-932. Abstract/PDF DOI arXiv PMID 28230532

  3. F. Ciompi, O.G.F. Geessink, B.E. Bejnordi, G.S. de Souza, A. Baidoshvili, G. Litjens, B. van Ginneken, I.D. Nagtegaal and J.A. van der Laak. "The importance of stain normalization in colorectal tissue classification with convolutional networks", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 160-163. Abstract/PDF DOI arXiv

  4. M. Ghafoorian, A. Mehrtash, T. Kapur, N. Karssemeijer, E. Marchiori, M. Pesteie, C.R.G. Guttmann, F.-E. de Leeuw, C.M. Tempany, B. van Ginneken, A. Fedorov, P. Abolmaesumi, B. Platel and W.M. Wells. "Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation", in: Medical Image Computing and Computer-Assisted Intervention, volume 10435 of Lecture Notes in Computer Science, 2017, pages 516-524. Abstract/PDF DOI arXiv

  5. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "A step towards measuring the fetal head circumference with the use of obstetric ultrasound in a low resource setting", in: Medical Imaging, volume 10139 of Proceedings of the SPIE, 2017, page 101390V. Abstract/PDF DOI

  6. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "Combining Automated Image Analysis with Obstetric Sweeps for Prenatal Ultrasound Imaging in Developing Countries", in: MICCAI Workshop: Point-of-Care Ultrasound, volume 10549 of Lecture Notes in Computer Science, 2017, pages 105-112. Abstract/PDF DOI

  7. G.E. Humpire Mamani, A.A.A. Setio, B. van Ginneken and C. Jacobs. "Organ detection in thorax abdomen CT using multi-label convolutional neural networks", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI

  8. T. Kooi and N. Karssemeijer. "Deep learning of symmetrical discrepancies for computer-aided detection of mammographic masses", in: Medical Imaging, volume 10133 of Proceedings of the SPIE, 2017, page 101341J. Abstract/PDF DOI

  9. T. Kooi, J.-J. Mordang and N. Karssemeijer. "Conditional Random Field Modelling of Interactions Between Findings in Mammography", in: Medical Imaging, volume 10133 of Proceedings of the SPIE, 2017, page 101341E. Abstract/PDF DOI

  10. B. Liefers, F.G. Venhuizen, T. Theelen, C. Hoyng, B. van Ginneken and C.I. Sanchez. "Fovea Detection in Optical Coherence Tomography using Convolutional Neural Networks", in: Medical Imaging, volume 10133 of Proceedings of the SPIE, 2017, page 1013302. Abstract/PDF DOI

  11. A. Mehrtash, A. Sedghi, M. Ghafoorian, M. Taghipour, C.M. Tempany, W.M. Wells, T. Kapur, P. Mousavi, P. Abolmaesumi and A. Fedorov. "Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017, pages 101342A-101342A-4. Abstract/PDF DOI

  12. A. Patel, S. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Automatic Cerebrospinal Fluid Segmentation in Non-Contrast CT Images Using a 3D Convolutional Network", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI


Abstracts

  1. J. Bukala, G.E. Humpire Mamani, E. Scholten, M. Prokop, B. van Ginneken and C. Jacobs. "Fully Automatic Measurement of the Splenic Volume in CT with U-Net Convolutional Neural Networks", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  2. J.J. Gomez, C.I. Sanchez, B. Liefers, F.G. Venhuizen, G. Fatti, A. Morilla-Grasa, Y. Cartagena, A.H. Cabarcos, A. Santos, M.J. Ledesma-Carbayo and A. Anton-Lopez. "Automated Analysis of Retinal Images for detection of Glaucoma based on Convolutional Neural Networks", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  3. M. Hermsen, T. de Bel, M. van de Warenburg, J. Knuiman, E. Steenbergen, G. Litjens, B. Smeets, L. Hilbrands and J. van der Laak. "Automatic segmentation of histopathological slides from renal allograft biopsies using artificial intelligence", in: Dutch Federation of Nephrology (NfN) Fall Symposium, 2017. Abstract/PDF

  4. T.L.A. van den Heuvel, C.L. de Korte and B. van Ginneken. "Automated Measurement of Fetal Head Circumference in Ultrasound Images", in: Dutch Bio-Medical Engineering Conference, 2017. PDF

  5. S. van de Leemput, F.J.A. Meijer, M. Prokop and R. Manniesing. "Cerebral white matter, gray matter and cerebrospinal fluid segmentation in CT using VCAST: a volumetric cluster annotation and segmentation tool", in: European Congress of Radiology, 2017. Abstract

  6. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, T. Theelen and C.I. Sanchez. "Automatic detection of the foveal center in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  7. M. Meijs, S. Pegge, M. Prokop, B. van Ginneken, F.J.A. Meijer and R. Manniesing. "Detection of vessel occlusion in acute stroke is facilitated by color-coded 4D-CTA", in: European Congress of Radiology, 2017. Abstract/PDF

  8. A. Patel, F.J.A. Meijer, M. Prokop, B. van Ginneken and R. Manniesing. "Robust segmentation of the cranial cavity in non-contrast CT and CT perfusion of the brain", in: European Congress of Radiology, 2017. Abstract

  9. S.A. Pegge, M. Meijs, M. Prokop, R. Manniesing and F.J. Meijer. "Color-mapping of 4D-CTA for the detection and classification of cranial arteriovenous fistulas", in: European Society of Neuroradiology, 2017. Abstract/PDF

  10. A. Schreuder, C.M. Schaefer-Prokop, E.T. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Use of a risk model combining clinical information and CT findings to customize follow-up intervals in lung cancer screening", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  11. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C. Schaefer-Prokop, A. Marchianò and U. Pastorino. "Subsolid and part-solid nodules in lung cancer screening: comparison between visual and computer-aided detection", in: European Congress of Radiology, 2017. Abstract

  12. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, M. Prokop, A. Marchiano and U. Pastorino. "Non-solid and Part-solid Nodules: Comparison Between Visual and Computer Aided Detection", in: World Congress of Thoracic Imaging, 2017. Abstract

  13. L. Stoilescu and H. Huisman. "Feasibility of multireferencetissue normalization of T2weighted prostate MRI", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  14. L. Stoilescu, M.C. Maas and H. Huisman. "Feasibility of multireference tissue normalization of T2-weighted prostate MRI", in: European Society for Magnetic Resonance in Medicine and Biology, 2017. Abstract

  15. J. Teuwen, M. Kallenberg, A. Gubern-Merida, A. Rodriguez-Ruiz, N. Karssemeijer and R. Mann. "Automated pre-selection of mammograms without abnormalities using deep learning", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  16. F.G. Venhuizen, S. Schaffhauser, V. Schreur, B. Liefers, B. van Ginneken, C.B. Hoyng, T. Theelen, E.K. de Jong and C.I. Sanchez. "Fully automated detection of hyperreflective foci in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract


Theses

  1. J.P. Charbonnier. "Segmentation & quantification of airways and blood vessels in chest CT", PhD thesis, Radboud University, Nijmegen, 2017. Abstract/PDF URL

  2. K. Holland. "Breast density measurement for personalised screening", PhD thesis, Radboud University, Nijmegen, 2017. Abstract/PDF URL

  3. T. Kockelkorn. "Interactive texture analysis in chest CT Scans", PhD thesis, Utrecht University, 2017. Abstract/PDF URL

  4. N. Kraamwinkel. "Automatic Liver Lesion Segmentation in Abdominal CT Scans: Exploring Cascaded 2D and 2.5D U-Net Approaches", Masters thesis, Universiteit van Amsterdam, 2017. Abstract/PDF URL


2016

Papers in international journals

  1. W.J.M. van de Ven, W. Venderink, J.P.M. Sedelaar, J. Veltman, J.O. Barentsz, J.J. Fütterer, E.B. Cornel and H.J. Huisman. "MR-targeted TRUS prostate biopsy using local reference augmentation: initial experience", International Urology and Nephrology 2016. Abstract/PDF DOI PMID 27068817

  2. R.M. Arntz, S. van den Broek, I.W. van Uden, M. Ghafoorian, B. Platel, L.C. Rutten-Jacobs, N.A. Maaijwee, P. Schaapsmeerders, H.C. Schoonderwaldt, E.J. van Dijk and F. de Leeuw. "Accelerated development of cerebral small vessel disease in young stroke patients", Neurology 2016. Abstract/PDF DOI PMID 27521431

  3. B.E. Bejnordi, M. Balkenhol, G. Litjens, R. Holland, P. Bult, N. Karssemeijer and J. van der Laak. "Automated Detection of DCIS in Whole-Slide H&E Stained Breast Histopathology Images", IEEE Transactions on Medical Imaging 2016;35(9):2141-2150. Abstract/PDF DOI PMID 27076354

  4. B.E. Bejnordi, G. Litjens, N. Timofeeva, I. Otte-Holler, A. Homeyer, N. Karssemeijer and J. van der Laak. "Stain specific standardization of whole-slide histopathological images", IEEE Transactions on Medical Imaging 2016;35(2):404-415. Abstract/PDF DOI PMID 26353368

  5. G. Bozovic, S. Steen, T. Sjöberg, C. Schaefer-Prokop, J. Verschakelen, Q. Liao, P. Höglund, R. Siemund and I.M. Björkman-Burtscher. "Circulation stabilizing therapy and pulmonary high-resolution computed tomography in a porcine brain-dead model", Acta Anaesthesiologica Scandinavica 2016;60:93-102. Abstract/PDF DOI PMID 26251260

  6. R. Busch, M.K. Han, R.P. Bowler, M.T. Dransfield, J.M. Wells, E.A. Regan, C.P. Hersh and COPDGene Investigators. "Risk factors for COPD exacerbations in inhaled medication users: the COPDGene study biannual longitudinal follow-up prospective cohort", BMC Pulmonary Medicine 2016;16:28. Abstract/PDF DOI PMID 26861867

  7. J. Charbonnier, M. Brink, F. Ciompi, E. Scholten, C. Schaefer-Prokop and E. van Rikxoort. "Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching", IEEE Transactions on Medical Imaging 2016:882-892. Abstract/PDF DOI PMID 26584489

  8. F. Ciompi, S. Balocco, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Computer-aided detection of intracoronary stent in intravascular ultrasound sequences", Medical Physics 2016;43:5616. Abstract/PDF DOI PMID 27782708

  9. J.G. Cohen, J.M. Goo, R.-E. Yoo, C.M. Park, C.H. Lee, B. van Ginneken, D.H. Chung and Y.T. Kim. "Software performance in segmenting ground-glass and solid components of subsolid nodules in pulmonary adenocarcinomas", European Radiology 2016;26(12):4465-4474. Abstract/PDF DOI PMID 27048527

  10. J.G. Cohen, J.M. Goo, R.-E. Yoo, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee and C.M. Park. "The effect of late-phase contrast enhancement on semi-automatic software measurements of CT attenuation and volume of part-solid nodules in lung adenocarcinomas", European Journal of Radiology 2016;85(6):1174-1180. Abstract/PDF DOI PMID 27161068

  11. M. Dalmis, A. Gubern-Merida, S. Vreemann, N. Karssemeijer, R. Mann and B. Platel. "A Computer-Aided Diagnosis System for Breast DCE-MRI at High Spatiotemporal Resolution", Medical Physics 2016;43(1):84-94. Abstract/PDF DOI PMID 26745902

  12. O.A. Debats, A.S. Fortuin, H.J.M. Meijer, T. Hambrock, G.J.S. Litjens, J.O. Barentsz and H.J. Huisman. "Intranodal signal suppression in pelvic MR lymphography of prostate cancer patients: a quantitative comparison of ferumoxtran-10 and ferumoxytol", PeerJ 2016;4:e2471. Abstract/PDF DOI PMID 27781154

  13. O.A. Debats, M. Meijs, G.J.S. Litjens and H.J. Huisman. "Automated multistructure atlas-assisted detection of lymph nodes using pelvic MR lymphography in prostate cancer patients", Medical Physics 2016;43(6):3132. Abstract/PDF DOI PMID 27277059

  14. L. Gallardo-Estrella, D.A. Lynch, M. Prokop, D. Stinson, J. Zach, P.F. Judy, B. van Ginneken and E.M. van Rikxoort. "Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification", European Radiology 2016;26:478-486. Abstract/PDF DOI PMID 26002132

  15. M. Ghafoorian, N. Karssemeijer, I.W.M. van Uden, F.-E. de Leeuw, T. Heskes, E. Marchiori and B. Platel. "Automated Detection of White Matter Hyperintensities of All Sizes in Cerebral Small Vessel Disease", Medical Physics 2016;43(12):6246-6258. Abstract/PDF DOI PMID 27908171

  16. H. Greenspan, R.M. Summers and B. van Ginneken. "Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique", IEEE Transactions on Medical Imaging 2016;35(5):1153-1159. PDF DOI

  17. M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez.. "Fast Convolutional Neural Network Training Using Selective Data Sampling: Application to Hemorrhage Detection in Color Fundus Images", IEEE Transactions on Medical Imaging 2016;35(5):1273-1284. Abstract/PDF DOI PMID 26886969

  18. M.J.J.P. van Grinsven, T. Theelen, L. Witkamp, J. van der Heijden, J.P.H. van de Ven, C.B. Hoyng, B. van Ginneken and C.I. Sanchez. "Automatic differentiation of color fundus images containing drusen or exudates using a contextual spatial pyramid approach", Biomedical Optics Express 2016;7(3):709-725. Abstract/PDF DOI PMID 27231583

  19. A. Gubern-Merida, S. Vreemann, R. Marti, J. Melendez, S. Lardenoije, R. Mann, N. Karssemeijer and B. Platel. "Automated detection of breast cancer in false-negative screening MRI studies from women at increased risk", European Journal of Radiology 2016;85(2):472-479. Abstract/PDF DOI PMID 26781154

  20. T.L.A. van den Heuvel, A.W. van der Eerden, R. Manniesing, M. Ghafoorian, T. Tan, T.M.J.C. Andriessen, T.V. Vyvere, L. van den Hauwe, B.M. ter Haar Romeny, B.M. Goraj and B. Platel. "Automated detection of cerebral microbleeds in patients with Traumatic Brain Injury", NeuroImage: Clinical 2016;12:241 - 251. Abstract/PDF DOI PMID 27489772

  21. J.D. Hoffman, M.J.J.P. van Grinsven, C. Li, M. Brantley, Jr, J. McGrath, A. Agarwal, W.K. Scott, S.G. Schwartz, J. Kovach, M. Pericak-Vance, C.I. Sanchez and J.L. Haines. "Genetic Association Analysis of Drusen Progression", Investigative Ophthalmology and Visual Science 2016;57(4):2225-2231. Abstract/PDF DOI PMID 27116550

  22. K. Holland, J. van Zelst, G.J. den Heeten, M. Imhof-Tas, R.M. Mann, C.H. van Gils and N. Karssemeijer. "Consistency of breast density categories in serial screening mammograms: A comparison between automated and human assessment", Breast 2016;29:49-54. Abstract/PDF DOI PMID 27420382

  23. C. Jacobs, E.M. van Rikxoort, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology 2016;26:2139-2147. Abstract/PDF DOI PMID 26443601

  24. M. Kallenberg, K. Petersen, M. Nielsen, A. Ng, P. Diao, C. Igel, C. Vachon, K. Holland, N. Karssemeijer and M. Lillholm. "Unsupervised deep learning applied to breast density segmentation and mammographic risk scoring", IEEE Transactions on Medical Imaging 2016;35:1322-1331. Abstract/PDF DOI PMID 26915120

  25. T. Kobus, J.A.W.M. van der Laak, M.C. Maas, T. Hambrock, C.C. Bruggink, C.A. Hulsbergen-van de Kaa, T.W.J. Scheenen and A. Heerschap. "Contribution of Histopathologic Tissue Composition to Quantitative MR Spectroscopy and Diffusion-weighted Imaging of the Prostate", Radiology 2016;278(3):801-811. Abstract/PDF DOI PMID 26418614

  26. T.T. Kockelkorn, R. Ramos, J. Ramos, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Optimization Strategies for Interactive Classification of Interstitial Lung Disease Textures", Frontiers in ICT 2016;3:33. Abstract/PDF DOI

  27. T.T.J.P. Kockelkorn, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, H.A. Gietema, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Semi-automatic classification of textures in thoracic CT scans", Physics in Medicine and Biology 2016;61(16):5906-5924. Abstract/PDF DOI PMID 27436568

  28. C.L. de Korte, S. Fekkes, A.J. Nederveen, R. Manniesing and H. Hansen. "Review: Mechanical Characterization of Carotid Arteries and Atherosclerotic Plaques", IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control 2016;63(10):1613-1623. Abstract/PDF DOI PMID 27249826

  29. T.D. Koster, E.M. van Rikxoort, R.-H. Huebner, F. Doellinger, K. Klooster, J. Charbonnier, S. Radhakrishnan, F.J.F. Herth and D.-J. Slebos. "Predicting Lung Volume Reduction after Endobronchial Valve Therapy Is Maximized Using a Combination of Diagnostic Tools", Respiration 2016;92:150-7. Abstract/PDF DOI PMID 27577190

  30. E. Lens, A.N. Kotte, A. Patel, H.D. Heerkens, M. Bal, G. van Tienhoven, A. Bel, A. van der Horst and G.J. Meijer. "Probabilistic treatment planning for pancreatic cancer treatment: prospective incorporation of respiratory motion shows only limited dosimetric benefit", Acta Oncologica 2016:1-7. PDF DOI PMID 27885864

  31. G. Litjens, C.I. Sanchez, N. Timofeeva, M. Hermsen, I. Nagtegaal, I. Kovacs, C. Hulsbergen-van de Kaa, P. Bult, B. van Ginneken and J. van der Laak. "Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis", Nature Scientific Reports 2016;6:26286. Abstract/PDF DOI PMID 27212078

  32. P. Maduskar, R.H.M.M. Philipsen, J. Melendez, E. Scholten, D. Chanda, H. Ayles, C.I. Sanchez and B. van Ginneken. "Automatic detection of pleural effusion in chest radiographs", Medical Image Analysis 2016;28:22-32. Abstract/PDF DOI PMID 26688067

  33. R. Manniesing, C. Brune, B. van Ginneken and M. Prokop. "A 4D CT Digital Phantom of an Individual Human Brain for Perfusion Analysis", PeerJ 2016;4:e2683. Abstract/PDF DOI PMID 27917312

  34. R. Manniesing, M.T.H. Oei, B. van Ginneken and M. Prokop. "Quantitative Dose Dependency Analysis of Whole-Brain CT Perfusion Imaging", Radiology 2016;278(1):190-197. Abstract/PDF DOI PMID 26114226

  35. M. Meijs, S. Christensen, M.G. Lansberg, G.W. Albers and F. Calamante. "Analysis of perfusion MRI in stroke: To deconvolve, or not to deconvolve", Magnetic Resonance in Medicine 2016;76:1282-1290. Abstract/PDF DOI PMID 26519871

  36. J. Melendez, B. van Ginneken, P. Maduskar, R. Philipsen, H. Ayles and C.I. Sanchez. "On Combining Multiple-Instance Learning and Active Learning for Computer-Aided Detection of Tuberculosis", IEEE Transactions on Medical Imaging 2016;35(4):1013-1024. Abstract/PDF DOI PMID 26660889

  37. J. Melendez, C.I. Sanchez, R.H.H.M. Philipsen, P. Maduskar, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "An automated tuberculosis screening strategy combining X-ray-based computer-aided detection and clinical information", Nature Scientific Reports 2016;6:25265. Abstract/PDF DOI PMID 27126741

  38. O.M. Mets, P.A. de Jong, K. Chung, J.-W.J. Lammers, B. van Ginneken and C.M. Schaefer-Prokop. "Fleischner recommendations for the management of subsolid pulmonary nodules: high awareness but limited conformance - a survey study", European Radiology 2016;26:3840-3849. Abstract/PDF DOI PMID 26945759

  39. J.-J. Mordang, A. Gubern-Merida, G. den Heeten and N. Karssemeijer. "Reducing false positives of microcalcification detection systems by removal of breast arterial calcifications", Medical Physics 2016;43(4):1676-1687. Abstract/PDF DOI PMID 27036566

  40. E. Pompe, P.A. de Jong, E.M. van Rikxoort, L. Gallardo Estrella, W.U. de Jong, R. Vliegenthart, M. Oudkerk, C.M. van der Aalst, B. van Ginneken, J.-W.J. Lammers and F.A. Mohamed Hoesein. "Smokers with emphysema and small airway disease on computed tomography have lower bone density", International Journal of Chronic Obstructive Pulmonary Disease 2016;11:1207-1216. Abstract/PDF DOI PMID 27354779

  41. M. Pompe, E. van Rikxoort, O. Mets, J. Charbonnier, J. Kuhnigk, H. de Koning, M. Oudkerk, R. Vliegenthart, P. Zanen, J. Lammers, B. van Ginneken, P. de Jong and F. Mohamed Hoesein. "Follow-up of CT-derived airway wall thickness: Correcting for changes in inspiration level improves reliability", European Journal of Radiology 2016;85:2008-2013. Abstract/PDF DOI PMID 27776653

  42. R. Remark, T. Merghoub, N. Grabe, G. Litjens, D. Damotte, J.D. Wolchok, M. Merad and S. Gnjatic. "In-depth tissue profiling using multiplexed immunohistochemical consecutive staining on single slide", Science Immunology 2016;1(1):aaf6925-aaf6925. Abstract/PDF DOI PMID 28783673

  43. C.A. Ridge, A. Yildirim, P.M. Boiselle, T. Franquet, C.M. Schaefer-Prokop, D. Tack, P.A. Gevenois and A.A. Bankier. "Differentiating between Subsolid and Solid Pulmonary Nodules at CT: Inter- and Intraobserver Agreement between Experienced Thoracic Radiologists", Radiology 2016:888-96. Abstract/PDF DOI PMID 26458208

  44. A.J. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J.M. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi, M.S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT Scans", Journal of Thoracic Oncology 2016;11:709-717. Abstract/PDF DOI PMID 26994641

  45. S. Schalekamp, N. Karssemeijer, A.M. Cats, B. De Hoop, B.H.J. Geurts, O. Berger-Hartog, B. van Ginneken and C.M. Schaefer-Prokop. "The Effect of Supplementary Bone-Suppressed Chest Radiographs on the Assessment of a Variety of Common Pulmonary Abnormalities: Results of an Observer Study", Journal of Thoracic Imaging 2016;31(2):119-125. Abstract/PDF DOI PMID 26783697

  46. J. Schwaab, Y. Diez, A. Oliver, R. Marti, J. van Zelst, A. Gubern-Merida, A.B. Mourri, J. Gregori and M. Gunther. "Automated quality assessment in three-dimensional breast ultrasound images", Journal of Medical Imaging 2016;3:027002. Abstract/PDF DOI PMID 27158633

  47. A.A.A. Setio, F. Ciompi, G. Litjens, P. Gerke, C. Jacobs, S. van Riel, M.W. Wille, M. Naqibullah, C.I. Sanchez and B. van Ginneken. "Pulmonary nodule detection in CT images: false positive reduction using multi-view convolutional networks", IEEE Transactions on Medical Imaging 2016;35(5):1160-1169. Abstract/PDF DOI PMID 26955024

  48. T. Tan, A. Gubern-Merida, C. Borelli, R. Manniesing, J. van Zelst, L. Wang, W. Zhang, B. Platel, R.M. Mann and N. Karssemeijer. "Segmentation of malignant lesions in 3D breast ultrasound using a depth-dependent model", Medical Physics 2016;43(7):4074-4084. Abstract/PDF DOI PMID 27370126

  49. J. Teuwen. "On the integral kernels of derivatives of the Ornstein-Uhlenbeck semigroup", Infinite Dimensional Analysis, Quantum Probability and Related Topics 2016;19(04):1650030. PDF DOI

  50. W.M. van de Ven, J. Sedelaar, M. van der Leest, C. Hulsbergen-van de Kaa, J. Barentsz, J. Futterer and H.J. Huisman. "Visibility of prostate cancer on transrectal ultrasound during fusion with multi-parametric magnetic resonance imaging for biopsy", Clinical Imaging 2016;40(4):745-750. Abstract/PDF DOI PMID 25979040


Papers in conference proceedings

  1. A. Bria, C. Marrocco, N. Karssemeijer, M. Molinara and F. Tortorella. "Deep Cascade Classifiers to Detect Clusters of Microcalcifications", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 415-422. Abstract/PDF DOI

  2. A. Bria, C. Marrocco, J.J. Mordang, N. Karssemeijer, M. Molinara and F. Tortorella. "LUT-QNE: Look-Up-Table Quantum Noise Equalization in Digital Mammograms", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 27-34. Abstract/PDF DOI

  3. E. Garcia, A. Oliver, Y. Diez, O. Diaz, A. Gubern-Merida, X. Llado and J. Marti. "Comparison of Four Breast Tissue Segmentation Algorithms for Multi-modal MRI to X-ray Mammography Registration", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 493-500. Abstract/PDF DOI

  4. J. Georgii, T. Paetz, M. Harz, C. Stoecker, M. Rothgang, J. Colletta, K. Schilling, M. Schlooz-Vries, R. Mann and H.K. Hahn. "Simulation and Visualization to Support Breast Surgery Planning", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 257-264. Abstract/PDF DOI

  5. M. Ghafoorian, N. Karssemeijer, T. Heskes, I.W.M. van Uden, F.-E. de Leeuw, E. Marchiori, B. van Ginneken and B. Platel. "Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation", in: IEEE International Symposium on Biomedical Imaging, 2016, pages 1414-1417. Abstract/PDF DOI

  6. A. Gubern-Merida, T. Tan, J. van Zelst, R.M. Mann and N. Karssemeijer. "Automated linking of suspicious findings between automated 3D breast ultrasound volumes", in: Medical Imaging of Proceedings of the SPIE, 2016. Abstract/PDF DOI

  7. K. Holland, C.H. van Gils, J.O.P. Wanders, R.M. Mann and N. Karssemeijer. "Quantification of mammographic masking risk with volumetric breast density maps: How to select women for supplemental screening", in: Medical Imaging of Proceedings of the SPIE, 2016. Abstract/PDF DOI

  8. K. Holland, I. Sechopoulos, G. den Heeten, R. Mann and N. Karssemeijer. "Performance of breast cancer screening depends on mammographic compression", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 183-189. Abstract/PDF DOI

  9. M. Kallenberg, M. Nielsen, K. Holland, N. Karssemeijer, C. Igel and M. Lillholm. "Learning Density Independent Texture Features", in: Breast Imaging, volume 9699, 2016, pages 299-306. Abstract/PDF DOI

  10. T. Kooi, A. Gubern-Merida, J.J. Mordang, R. Mann, R. Pijnappel, K. Schuur, A. den Heeten and N. Karssemeijer. "A Comparison Between a Deep Convolutional Neural Network and Radiologists for Classifying Regions of Interest in Mammography", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 51-56. Abstract/PDF DOI

  11. N. Lessmann, I. Išgum, A.A. Setio, B.D. de Vos, F. Ciompi, P.A. de Jong, M. Oudkerk, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Deep convolutional neural networks for automatic coronary calcium scoring in a screening study with low-dose chest CT", in: Medical Imaging, volume 9785 of Proceedings of the SPIE, 2016, pages 978511-1 - 978511-6. Abstract/PDF DOI

  12. G. Litjens, K. Safferling and N. Grabe. "Automated robust registration of grossly misregistered whole-slide images with varying stains", in: Medical Imaging, volume 9791 of Proceedings of the SPIE, 2016, page 979103. Abstract/PDF DOI

  13. T. Mertzanidou, J. Hipwell, S. Reis, B.E. Bejnordi, M. Hermsen, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, R. Mann, P. Bult and D. Hawkes. "Whole Mastectomy Volume Reconstruction from 2D Radiographs and Its Mapping to Histology", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 367-374. Abstract/PDF DOI

  14. J.J. Mordang, T. Janssen, A. Bria, T. Kooi, A. Gubern-Merida and N. Karssemeijer. "Automatic Microcalcification Detection in Multi-vendor Mammography Using Convolutional Neural Networks", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 35-42. Abstract/PDF DOI

  15. K. Vijverberg, M. Ghafoorian, I.W.M. van Uden, F.-E. de Leeuw, B. Platel and T. Heskes. "A single-layer network unsupervised feature learning method for white matter hyperintensity segmentation", in: Medical Imaging of Proceedings of the SPIE, 2016. Abstract/PDF DOI


Abstracts

  1. R. Becks, M. Meijs, R. Manniesing, J. Vister, S. Schalekamp, R. Mann, S. Steens, E. Smit, E. van Dijk, M. Prokop and F.J. Meijer. "Additional Value of Brain CT Perfusion in The Detection of Intracranial Vessel Occlusion in Acute Ischemic Stroke: A (Multi Experience Level) Inter-Observer Study", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  2. J. Charbonnier, M. Han, E. Pompe, C. Moore, S. Humphries, D. Lynch, van Ginneken B., B. Make and van Rikxoort E.. "CT-based models for prediction of chronic obstructed pulmonary disease and smoking-related morbidity in cigarette smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  3. J. Charbonnier, D. Lynch, S. Humphries, M. Strand and E. van Rikxoort. "Relative Contributions of Quantitative CT Measures to Airflow Obstruction in Cigarette Smokers", in: American Thoracic Society International Conference, 2016. Abstract

  4. J. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, D. Lynch, B. Make and E. van Rikxoort. "Airway Dimensions in Current and Former smokers: an independent predictor of Airflow Obstruction and Respiratory Quality of Life in Cigarette Smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  5. F. Ciompi, K. Chung, A.A.A. Setio, S.J. van Riel, E.T. Scholten, P.K. Gerke, C. Jacobs, U. Pastorino, A. Marchiano, M.M.W. Wille, M. Prokop and B. van Ginneken. "Pulmonary nodule type classification with convolutional networks", in: Medical Image Computing and Computer-Assisted Intervention, 2016. Abstract/PDF

  6. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Automatic detection of hemorrhages on color fundus images using deep learning", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  7. M. Hermsen and J. van der Laak. "Highly multiplexed immunofluorescence using spectral imaging", in: DPA's Pathology Visions Conference 2016, San Diego, CA, US, 2016. Abstract/PDF

  8. K. Kallenberg, M. Nielsen, K. Holland, N. Karssemeijer and M. Lillholm. "Breast Cancer Risk Prediction with Density Independent Texture Features", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  9. N. Karssemeijer, K. Holland, I. Sechopoulos, R. Mann, G. den Heeten and C. van Gils. "High Breast Compression in Mammography May Reduce Sensitivity", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  10. B. Liefers, V. Schreur, T. Theelen and C.I. Sanchez. "Registration and grading of micro-aneurysms in Fluorescein Angiography and OCT Angiography", in: 4th International Congress on OCT Angiography and Advances in OCT, 2016. Abstract

  11. R. Manniesing, S. van de Leemput, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D CT Images of Acute Ischemic Stroke Patients: a Feasibility Study", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  12. M. Meijs, M. Prokop, F.J. Meijer, B. van Ginneken and R. Manniesing. "Segmentation of small cerebral vessels on CT perfusion images of patients with suspected acute stroke", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract/PDF

  13. E.T. Scholten, C. Jacobs, C.M. Schaefer-Prokop, J. Rühaak, H.J. de Koning, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Temporal subtraction of chest CT in lung cancer screening", in: European Congress of Radiology, 2016. Abstract

  14. F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Fully automated quantification of intraretinal cysts in 3D optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  15. S. Vreemann, A. Gubern-Merida, C. Borelli, N. Karssemeijer and R. Mann. "Background Parenchymal Enhancement as a predictor of breast cancer grade: a pilot study", in: European Congress of Radiology, 2016. Abstract

  16. S. Vreemann, A. Gubern-Merida, S. Lardenoije, N. Karssemeijer and R. Mann. "The performance of MRI screening in the detection of breast cancer in an intermediate and high risk screening program", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2016. Abstract

  17. S. Vreemann, A. Gubern-Merida, S. Lardenoije, N. Karssemeijer and R. Mann. "Differences between cancers detected in prophylactic mastectomy specimen, screen detected cancers and true interval cancers in women participating in an intermediate and high risk screening program", in: European Breast Cancer Conference, 2016. Abstract

  18. S. Vreemann, A. Gubern-Merida, S. Lardenoije, N. Karssemeijer and R. Mann. "Prognostic factors of interval carcinomas occurring in an intermediate and high risk breast cancer screening program", in: European Congress of Radiology, 2016. Abstract

  19. J. Wanders, K. Holland, P. Peeters, N. Karssemeijer and C. van Gils. "Volumetric Breast Density And The Risk Of Screen-Detected And Interval Breast Cancer", in: Annual conference of the International Agency for Research on Cancer, 2016. Abstract


Theses

  1. M. van Grinsven. "Automated analysis of retinal images for detection of age-related macular degeneration and diabetic retinopathy", PhD thesis, Radboud University, Nijmegen, 2016. Abstract/PDF URL

  2. N. Moriakov. "Entropy and Kolmogorov complexity", PhD thesis, Delft University of Technology, 2016. Abstract/PDF DOI

  3. J. Teuwen. "Shedding new light on gaussian harmonic analysis", PhD thesis, Delft University of Technology, 2016. Abstract/PDF DOI

  4. W. van de Ven. "MRI guided TRUS prostate biopsy - a viable alternative?", PhD thesis, Radboud University, Nijmegen, 2016. Abstract/PDF URL


Other publications

  1. R. Beichel, K. Farahani, C. Jacobs, S. Kabus, A.P. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, J. Petersen and S. Rit. "The Sixth International Workshop on Pulmonary Image Analysis", 2016. Abstract/PDF URL


2015

Papers in international journals

  1. D. van der Waal, M.J. Emaus, M.F. Bakker, G.J. den Heeten, N. Karssemeijer, R.M. Pijnappel, W.B. Veldhuis, A.L.M. Verbeek, C.H. van Gils and M.J.M. Broeders. "Geographic variation in volumetric breast density between screening regions in the Netherlands", European Radiology 2015;25(11):3328-3337. Abstract/PDF DOI PMID 26134996

  2. H.M. van der Holst, I.W.M. van Uden, A.M. Tuladhar, K.F. de Laat, A.G.W. van Norden, D.G. Norris, E.J. van Dijk, R.A.J. Esselink, B. Platel and F.-E. de Leeuw. "Cerebral small vessel disease and incident parkinsonism: The RUN DMC study", Neurology 2015;85(18):1569-1577. Abstract/PDF DOI PMID 26446068

  3. A.M. Bluekens, W.J. Veldkamp, K.H. Schuur, N. Karssemeijer, M.J. Broeders and G.J. den Heeten. "The potential use of ultra-low radiation dose images in digital mammography - a clinical proof-of-concept study in craniocaudal views", British Journal of Radiology 2015;88(1047):20140626. Abstract/PDF DOI PMID 25571915

  4. F. Ciompi, B. de Hoop, S.J. van Riel, K. Chung, E.T. Scholten, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box", Medical Image Analysis 2015;26(1):195-202. Abstract/PDF DOI PMID 26458112

  5. F. Ciompi, C. Jacobs, E. Scholten, M. Winkler Wille, P. de Jong, M. Prokop and B. van Ginneken. "Bag of frequencies: a descriptor of pulmonary nodules in Computed Tomography images", IEEE Transactions on Medical Imaging 2015;34(4):1-12. Abstract/PDF DOI PMID 25420257

  6. A.E. Dijkstra, D.S. Postma, B. van Ginneken, M.O. Wielpütz, M. Schmidt, N. Becker, M. Owsijewitsch, H.-U. Kauczor, H.J. de Koning, J.W. Lammers, M. Oudkerk, C.-A. Brandsma, Y. Bosse, D.C. Nickle, D.D. Sin, P.S. Hiemstra, C. Wijmenga, J. Smolonska, P. Zanen, J.M. Vonk, M. van den Berge, H.M. Boezen and H.J.M. Groen. "Novel Genes for Airway Wall Thickness Identified with Combined Genome Wide Association and Expression Analyses", American Journal of Respiratory and Critical Care Medicine 2015;191(5):547-556. Abstract/PDF DOI PMID 25517131

  7. M.J. Emaus, M.F. Bakker, P.H.M. Peeters, C.E. Loo, R.M. Mann, M.D.F. de Jong, R.H.C. Bisschops, J. Veltman, K.M. Duvivier, M.B.I. Lobbes, R.M. Pijnappel, N. Karssemeijer, H.J. de Koning, M.A.A.J. van den Bosch, E.M. Monninkhof, W.P.T.M. Mali, W.B. Veldhuis and C.H. van Gils. "MR Imaging as an Additional Screening Modality for the Detection of Breast Cancer in Women Aged 50-75 Years with Extremely Dense Breasts: The DENSE Trial Study Design", Radiology 2015;277(2):527-537. Abstract/PDF DOI PMID 26110667

  8. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, C.B. Hoyng, T. Theelen, C.C.W. Klaver and C.I. Sanchez. "Automatic identification of reticular pseudodrusen using multimodal retinal image analysis", Investigative Ophthalmology and Visual Science 2015;56(1):633-639. Abstract/PDF DOI PMID 25574052

  9. A. Gubern-Merida, M. Kallenberg, R.M. Mann, R. Marti and N. Karssemeijer. "Breast Segmentation and Density Estimation in Breast MRI: A Fully Automatic Framework", IEEE Journal of Biomedical and Health Informatics 2015;19(1):349-357. Abstract/PDF DOI PMID 25561456

  10. A. Gubern-Merida, R. Marti, J. Melendez, J. Hauth, R. Mann, N. Karssemeijer and B. Platel. "Automated localization of breast cancer in DCE-MRI", Medical Image Analysis 2015;20(1):265-274. Abstract/PDF DOI PMID 25532510

  11. L.P. Hayden, B.D. Hobbs, R.T. Cohen, R.A. Wise, W. Checkley, J.D. Crapo, C.P. Hersh and COPDGene Investigators. "Childhood pneumonia increases risk for chronic obstructive pulmonary disease: the COPDGene study", Respiratory Research 2015;16:115. Abstract/PDF DOI PMID 26392057

  12. L. Hogeweg, C.I. Sanchez, P. Maduskar, R. Philipsen, A. Story, R. Dawson, G. Theron, K. Dheda, L. Peters-Bax and B. van Ginneken. "Automatic detection of tuberculosis in chest radiographs using a combination of textural, focal, and shape abnormality analysis", IEEE Transactions on Medical Imaging 2015;34(12):2429-2442. Abstract/PDF DOI PMID 25706581

  13. C. Jacobs, E.M. van Rikxoort, E.T. Scholten, P.A. de Jong, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Solid, Part-Solid, or Non-solid?: Classification of Pulmonary Nodules in Low-Dose Chest Computed Tomography by a Computer-Aided Diagnosis System", Investigative Radiology 2015;50(3):168-173. Abstract/PDF DOI PMID 25478740

  14. J.D. Jaramillo, C. Wilson, D.S. Stinson, D.J. Stinson, D.A. Lynch, R.P. Bowler, S. Lutz, J.M. Bon, B. Arnold, M.-L.N. McDonald, G.R. Washko, E.S. Wan, D.L. DeMeo, M.G. Foreman, X. Soler, S.E. Lindsay, N.E. Lane, H.K. Genant, E.K. Silverman, J.E. Hokanson, B.J. Make, J.D. Crapo, E.A. Regan and COPD Gene Investigators. "Reduced Bone Density and Vertebral Fractures in Smokers. Men and COPD Patients at Increased Risk", Annals of the American Thoracic Society 2015;12(5):648-656. Abstract/PDF DOI PMID 25719895

  15. K. Klooster, N.H.T. ten Hacken, J.E. Hartman, H.A.M. Kerstjens, E.M. van Rikxoort and D.-J. Slebos. "Endobronchial Valves for Emphysema without Interlobar Collateral Ventilation", New England Journal of Medicine 2015;373(24):2325-2335. Abstract/PDF DOI PMID 26650153

  16. H.G.J. Kortman, E.J. Smit, M.T.H. Oei, R. Manniesing, M. Prokop and F.J.A. Meijer. "4D-CTA in Neurovascular Disease: A Review", American Journal of Neuroradiology 2015;36(6):1026-1033. Abstract/PDF DOI PMID 25355812

  17. B.C. Lassen, C. Jacobs, J.-M. Kuhnigk, B. van Ginneken and E.M. van Rikxoort. "Robust semi-automatic segmentation of pulmonary subsolid nodules in chest computed tomography scans", Physics in Medicine and Biology 2015;60(3):1307-1323. Abstract/PDF DOI PMID 25591989

  18. G.J.S. Litjens, J.O. Barentsz, N. Karssemeijer and H.J. Huisman. "Clinical evaluation of a computer-aided diagnosis system for determining cancer aggressiveness in prostate MRI", European Radiology 2015;25(11):3187-3199. Abstract/PDF DOI PMID 26060063

  19. J. Melendez, B. van Ginneken, P. Maduskar, R.H.H.M. Philipsen, K. Reither, M. Breuninger, I.M.O. Adetifa, R. Maane, H. Ayles and C.I. Sanchez. "A Novel Multiple-Instance Learning-Based Approach to Computer-Aided Detection of Tuberculosis on Chest X-Rays", IEEE Transactions on Medical Imaging 2015;34(1):179-192. Abstract/PDF DOI PMID 25163057

  20. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, H.J.M. Groen, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Airway wall thickness associated with forced expiratory volume in 1 second decline and development of airflow limitation", European Respiratory Journal 2015;45(3):644-651. Abstract/PDF DOI PMID 25614166

  21. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sanchez and B. van Ginneken. "Localized energy-based normalization of medical images: application to chest radiography", IEEE Transactions on Medical Imaging 2015;34(9):1965-75. Abstract/PDF DOI PMID 25838517

  22. R. Philipsen, C.I. Sanchez, P. Maduskar, J. Melendez, L. Peters-Bax, J. Peter, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "Automated chest-radiography as a triage for Xpert testing in resource-constrained settings: a prospective study of diagnostic accuracy and costs", Nature Scientific Reports 2015;5. Abstract/PDF DOI PMID 26212560

  23. M. Pokorny, W. Van de Ven, J. Barentsz and L. Thompson. "Reply to Yaalini Shanmugabavan, Stephanie Guillaumier and Hashim U. Ahmed's Letter to the Editor re: Morgan R. Pokorny, Maarten de Rooij, Earl Duncan, et al. Prospective Study of Diagnostic Accuracy Comparing Prostate Cancer Detection by Transrectal Ultrasound-Guided Biopsy Versus Magnetic Resonance (MR) Imaging with Subsequent MR-guided Biopsy in Men Without Previous Prostate Biopsies. Eur Urol 2014;66:22-9", European Urology 2015;67(3):e54-e55. PDF DOI PMID 25194908

  24. E. Pompe, E.M. van Rikxoort, M. Schmidt, J. Rühaak, L. Gallardo-Estrella, R. Vliegenthart, M. Oudkerk, H.J. de Koning, B. van Ginneken, P.A. de Jong, J.-W.J. Lammers and F.A.A. Mohamed Hoesein. "Parametric response mapping adds value to current computed tomography biomarkers in diagnosing chronic obstructive pulmonary disease", American Journal of Respiratory and Critical Care Medicine 2015;191(9):1084-1086. PDF DOI PMID 25932766

  25. J. Ramos, T. Kockelkorn, I. Ramos, R. Ramos, B. van Ginneken, M. Viergever, A. Campilho and J. Grutters. "Content Based Image Retrieval by Metric Learning from Radiology Reports: Application to Interstitial Lung Diseases", IEEE Journal of Biomedical and Health Informatics 2015;20(1):281-292. Abstract/PDF DOI PMID 25438332

  26. S.J. van Riel, C.I. Sanchez, A.A. Bankier, D.P. Naidich, J. Verschakelen, E.T. Scholten, P.A. de Jong, C. Jacobs, E. van Rikxoort, L. Peters-Bax, M. Snoeren, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Observer Variability for Classification of Pulmonary Nodules on Low-Dose CT Images and Its Effect on Nodule Management", Radiology 2015;277(3):863-871. Abstract/PDF DOI PMID 26020438

  27. E.T. Scholten, N. Horeweg, H.J. de Koning, R. Vliegenthart, M. Oudkerk, W.P.T.M. Mali and P.A. de Jong. "Computed tomographic characteristics of interval and post screen carcinomas in lung cancer screening", European Radiology 2015;25(1):81-88. Abstract/PDF DOI PMID 25187382

  28. E.T. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, H.A. Gietema, W.P.T.M. Mali and P.A. de Jong. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", European Radiology 2015;25(2):488-496. Abstract/PDF DOI PMID 25287262

  29. E.T. Scholten, P.A. de Jong, B. de Hoop, R. van Klaveren, S. van Amelsvoort-van de Vorst, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, R.M. Vernhout, H.J.M. Groen, J.-W.J. Lammers, B. van Ginneken, C. Jacobs, W.P.T.M. Mali, N. Horeweg, C. Weenink, E. Thunnissen, M. Prokop and H.A. Gietema. "Towards a close computed tomography monitoring approach for screen detected subsolid pulmonary nodules?", European Respiratory Journal 2015;45(3):765-773. Abstract/PDF DOI PMID 25431271

  30. E.T. Scholten, P.A. de Jong, C. Jacobs, B. van Ginneken, S. van Riel, M.J. Willemink, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, W.P.T.M. Mali and H.A. Gietema. "Interscan variation of semi-automated volumetry of subsolid pulmonary nodules", European Radiology 2015;25(4):1040-1047. Abstract/PDF DOI PMID 25413965

  31. A.A.A. Setio, C. Jacobs, J. Gelderblom and B. van Ginneken. "Automatic detection of large pulmonary solid nodules in thoracic CT images", Medical Physics 2015;42(10):5642-5653. Abstract/PDF DOI PMID 26429238

  32. D.-J. Slebos, E.M. van Rikxoort and W. van der Bij. "Air Trapping in Emphysema", American Journal of Respiratory and Critical Care Medicine 2015;192(5):e45. PDF DOI PMID 26325161

  33. E.J. Smit, E.-J. Vonken, F.J.A. Meijer, J.W. Dankbaar, A.D. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Timing-Invariant CT Angiography Derived from CT Perfusion Imaging in Acute Stroke: A Diagnostic Performance Study", American Journal of Neuroradiology 2015;36:1834-1838. Abstract/PDF DOI PMID 26113070

  34. O. Solyanik, P. Hollmann, S. Dettmer, T. Kaireit, C. Schaefer-Prokop, F. Wacker, J. Vogel-Claussen and H.-O. Shin. "Quantification of Pathologic Air Trapping in Lung Transplant Patients Using CT Density Mapping: Comparison with Other CT Air Trapping Measures", PLoS One 2015;10(10):e0139102. Abstract/PDF DOI PMID 26430890

  35. A. Steiner, C. Mangu, J. van den Hombergh, H. van Deutekom, B. van Ginneken, P. Clowes, F. Mhimbira, S. Mfinanga, A. Rachow, K. Reither and M. Hoelscher. "Screening for pulmonary tuberculosis in a Tanzanian prison and computer-aided interpretation of chest X-rays", Public Health Action 2015;5(4):249-254. Abstract/PDF DOI PMID 26767179

  36. R.A.P. Takx, R. Vliegenthart, F.A.A. Mohamed Hoesein, I. Išgum, H.J. de Koning, W.P.T.M. Mali, C.M. van der Aalst, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, E.M. van Rikxoort, M. Schmidt, B. van Ginneken, M. Oudkerk, T. Leiner and P.A. de Jong. "Pulmonary function and CT biomarkers as risk factors for cardiovascular events in male lung cancer screening participants: the NELSON study", European Radiology 2015;25(1):65-71. Abstract/PDF DOI PMID 25182625

  37. T. Tan, J.-J. Mordang, J. van Zelst, A. Grivegnee, A. Gubern-Merida, J. Melendez, R.M. Mann, W. Zhang, B. Platel and N. Karssemeijer. "Computer-aided detection of breast cancers using Haar-like features in automated 3D breast ultrasound", Medical Physics 2015;42(7):1498-1504. Abstract/PDF DOI PMID 25832040

  38. M.M. Teussink, M.B. Breukink, M.J.J.P. van Grinsven, C.B. Hoyng, B.J. Klevering, C.J.F. Boon, E.K. de Jong and T. Theelen. "OCT Angiography Compared to Fluorescein and Indocyanine Green Angiography in Chronic Central Serous Chorioretinopathy", Investigative Ophthalmology and Visual Science 2015;56(9):5229-5237. Abstract/PDF DOI PMID 26244299

  39. M.M. Teussink, B. Cense, M.J.J.P. van Grinsven, B.J. Klevering, C.B. Hoyng and T. Theelen. "Impact of motion-associated noise on intrinsic optical signal imaging in humans with optical coherence tomography", Biomedical Optics Express 2015;6(5):1632-1647. Abstract/PDF DOI PMID 26137369

  40. J. Teuwen. "A note on Gaussian maximal function", Indagationes Mathematicae 2015;26(1):106-112. Abstract/PDF DOI

  41. J.C. Van Zelst, B. Platel, N. Karssemeijer and R.M. Mann. "Multiplanar reconstructions of 3D automated breast ultrasound improve lesion differentiation by radiologists", Academic Radiology 2015;22(12):1489-1496. Abstract/PDF DOI

  42. M.M. Winkler Wille, S.J. van Riel, Z. Saghir, A. Dirksen, J.H. Pedersen, C. Jacobs, L.H. Thomsen, E.T. Scholten, L.T. Skovgaard and B. van Ginneken. "Predictive Accuracy of the PanCan Lung Cancer Risk Prediction Model -External Validation based on CT from the Danish Lung Cancer Screening Trial", European Radiology 2015;25:3093-3099. Abstract/PDF DOI PMID 25764091


Papers in conference proceedings

  1. B.E. Bejnordi, G. Litjens, M. Hermsen, N. Karssemeijer and J.A.W.M. van der Laak. "A multi-scale superpixel classification approach for region of interest detection in whole slide histopathology images", in: Medical Imaging, volume 9420 of Proceedings of the SPIE, 2015, page 94200H. Abstract/PDF DOI

  2. F. Ciompi, C. Jacobs, E.T. Scholten, S. van Riel, M.M.W. Wille, M. Prokop and B. van Ginneken. "Automatic detection of spiculation of pulmonary nodules in Computed Tomography images", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 941409. Abstract/PDF DOI

  3. E. Garcia, A. Oliver, Y. Diez, D.O., J. Georgii, A. Gubern-Merida, J. Marti and R. Marti. "Comparing regional breast density using Full-Field Digital Mammograms and Magnetic Resonance Imaging: A preliminary study", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  4. M. Ghafoorian, N. Karssemeijer, F.E. de Leeuw, T. Heskes, E. Marchiori and B. Platel. "Small White Matter Lesion Detection in Cerebral Small Vessel Disease", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 941411. Abstract/PDF DOI

  5. B. van Ginneken, A.A.A. Setio, C. Jacobs and F. Ciompi. "Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans", in: IEEE International Symposium on Biomedical Imaging, 2015, pages 286-289. Abstract/PDF DOI

  6. A. Gubern-Merida, T. Tan, J. van Zelst, R.M. Mann, B. Platel and N. Karssemeijer. "Pectoral muscle surface segmentation in automated 3D breast ultrasound using cylindrical transform and atlas information", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  7. T.L.A. van den Heuvel, M. Ghafoorian, A.W. van der Eerden, B.M. Goraj, T.M.J.C. Andriessen, B.M. ter Haar Romeny and B. Platel. "Computer Aided Detection of Brain Micro-Bleeds in Traumatic Brain Injury", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94142F. Abstract/PDF DOI

  8. S. van de Leemput, F. Dorssers and B. Ehteshami Bejnordi. "A novel spherical shell filter for reducing false positives in automatic detection of pulmonary nodules in thoracic CT scans", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94142P. Abstract/PDF DOI

  9. G. Litjens, B.E. Bejnordi, N. Timofeeva, G. Swadi, I. Kovacs, C.A. Hulsbergen-van de Kaa and J.A.W.M. van der Laak. "Automated detection of prostate cancer in digitized whole-slide images of H&E-stained biopsy specimens", in: Medical Imaging, volume 9420 of Proceedings of the SPIE, 2015, page 94200B. Abstract/PDF DOI

  10. M. Meijs, O.A. Debats and H.J. Huisman. "The evaluation of multi-structure, multi-atlas pelvic anatomy features in a prostate MR Lymphography CAD system", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94140T. Abstract/PDF DOI

  11. A.M. Mendrik, E.-j. Vonken, T. Witkamp, M. Prokop, B. van Ginneken and M.A. Viergever. "Using the Fourth Dimension to Distinguish Between Structures for Anisotropic Diffusion Filtering in 4D CT Perfusion Scans", in: Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, volume 8682 of Lecture Notes in Computer Science, 2015, pages 79-87. DOI

  12. J.-J. Mordang and N. Karssemeijer. "Vessel segmentation in screening mammograms", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94140J. Abstract/PDF DOI

  13. M. Razavi, L. Wang, A. Gubern-Merida, T. Ivanovska, H. Laue, N. Karssemeijer and H.K. Hahn. "Towards Accurate Segmentation of Fibroglandular Tissue in Breast MRI Using Fuzzy C-Means and Skin-Folds Removal", in: Image Analysis and ProcessingAC/a,!aEUR?ICIAP 2015, 2015, pages 528-536. PDF

  14. J. Schwaab, A. Gubern-Merida, L. Wang and M. Gunther. "Automatic assessment of nipple position in Automated 3D Breast Ultrasound images", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  15. A.A.A. Setio, C. Jacobs, F. Ciompi, S.J. van Riel, M.M.W. Wille, A. Dirksen, E.M. van Rikxoort and B. van Ginneken. "Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94141O. Abstract/PDF DOI

  16. F.G. Venhuizen, B. van Ginneken, B. Bloemen, M.J.J.P. van Grinsven, R. Philipsen, C. Hoyng, T. Theelen and C.I. Sanchez. "Automated Age-Related Macular Degeneration Classification in OCT using Unsupervised Feature Learning", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94141I. Abstract/PDF DOI

  17. L. Wang, J. Strehlow, J. Ruehaak, F. Weiler, Y. Diez, A. Gubern-Merida, S. Diekmann, H. Laue and H.K. Hahn. "A fast alignment method for breast MRI follow-up studies using automated breast segmentation and current-prior registration", in: Medical Imaging, volume 9413 of Proceedings of the SPIE, 2015, pages 941334-941334-8. Abstract/PDF DOI


Abstracts

  1. R. Arntz, S. van den Broek, L. Rutten-Jacobs, N. Maaijwee, I. van Uden, M. Ghafoorian, B. Platel, E. van Dijk and F. de Leeuw. "Small vessel disease after stroke at young age: the FUTURE-study", in: European Stroke Organization, 2015.

  2. J. Charbonnier, M. Brink, F. Ciompi, E.T. Scholten, C.M. Schaefer-Prokop and E.M. Van Rikxoort. "Automatic Separation and Classification of Arteries and Veins in Non-Contrast Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract URL

  3. J. Charbonnier, L. Hogeweg, J. Kuhnigk, D.A. Lynch and E.M. Van Rikxoort. "Sensitivity of airway wall thickness measurements: influence of small airways", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract URL

  4. K. Chung, E. Scholten, S. van Riel, F. Ciompi, P. de Jong, M. Wille, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Differentiation of persistent and transient subsolid nodules: does morphology help?", in: European Congress of Radiology, 2015. Abstract

  5. M. Dalmis, A. Gubern-Merida, S. Vreemann, R. Mann, N. Karssemeijer and B. Platel. "Early Phase Contrast Enhancement Dynamics of Breast Lesions of Different Molecular Subtypes Characterized by a Computer-Aided-Diagnosis System", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  6. M. Dalmis, A. Gubern-Merida, S. Vreemann, B. Platel, R. Mann and N. Karssemeijer. "Is Late Phase Information Necessary for Dynamic Evaluation of Breast Cancer?", in: European Congress of Radiology, 2015. Abstract

  7. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Automatic detection of eye diseases using automated color fundus image analysis", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  8. A. Gubern-Merida, T. Tan, J. van Zelst, R.M. Mann, B. Platel and N. Karssemeijer. "Evaluation of a Novel Method to Segment the Pectoral Muscle Surface in Automated Whole Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  9. A. Gubern-Merida, S. Vreemann, R. Marti, J. Melendez, S. Lardenoije, R.M. Mann, B. Platel and N. Karssemeijer. "Automated detection of breast cancer as an aid in the interpretation of screening MRI", in: European Congress of Radiology, 2015. Abstract

  10. A. Gubern-Merida, S. Vreemann, R. Marti, J. Melendez, R.M. Mann, B. Platel and N. Karssemeijer. "Automated Detection of Mass-like, Non-mass-like and Focus Breast Cancer Lesions Visible in False-negative Screening DCE-MRI", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  11. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "How can we identify women at risk for a masked cancer, who may benefit from supplemental screening?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  12. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "Optimisation of the selection of women with an increased risk of a masked tumour for supplementary screening", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  13. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "Consistency of density categories over multiple screening rounds using volumetric breast density", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  14. K. Holland, A. Gubern-Merida, R. Mann and N. Karssemeijer. "Improved volumetric breast density assessment in dense breasts", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015. Abstract

  15. M. Kallenberg, M. Lillholm, P. Diao, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Assessing breast cancer masking risk in full field digital mammography with automated texture analysis", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  16. M. Kallenberg, M. Lillholm, P. Diao, K. Petersen, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Assessing Breast Cancer Masking Risk with Automated Texture Analysis in Full Field Digital Mammography", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  17. M.G. Kallenberg, K. Petersen, M. Lillholm, D.R. JAfA, rgensen, P. Diao, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Automated texture scoring for assessing breast cancer masking risk in full field digital mammography", in: ECR, 2015. Abstract

  18. V. Lohner, I. van Uden, H. van der Holst, A. Tuladhar, A. van Norden, M. Bergkamp, K. de Laat, R. Arntz, M. Ghafoorian, B. Platel, E. van Dijk and F. de Leeuw. "Run away from small vessel disease: physical activity reduces progression of white matter hyperintensities: the RUN DMC study", in: European Stroke Organization, 2015.

  19. P. Maduskar, I. Adetifa, J. van den Hombergh, E. Leroy-Terquem, A. Fasan-Odunsi, C.I. Sanchez, U. d'Alessandro and B. van Ginneken. "Computerized Reading of Chest Radiographs in The Gambia National Tuberculosis Prevalence Survey: Retrospective Comparison with Human Experts", in: Union World Conference on Lung Health, 2015. Abstract

  20. R.H. Philipsen, C.I. Sanchez, P. Maduskar, J. Melendez, B. van Ginneken and W. Lew. "Objective Computerized Chest Radiography Screening to Detect Tuberculosis in the Philippines", in: Union World Conference on Lung Health, 2015. Abstract

  21. E. Pompe, P. De Jong, E. Van Rikxoort, L. Gallardo-Estrella, W. De Jong, R. Vliegenthart, M. Oudkerk, C. Van der Aalst, B. Van Ginneken, J.-W. Lammers and F. Mohamed Hoesein. "Bone density is associated with emphysema and air trapping on CT in smokers", in: American Thoracic Society International Conference, 2015. Abstract DOI

  22. S. van Riel, K. Chung, E. Scholten, P. de Jong, C. Schaefer-Prokop and B. van Ginneken. "ACR Lung-RADS guidelines for pure ground-glass nodules: is a threshold of 20mm adequate?", in: ECR, 2015. Abstract

  23. S. van Riel, F. Ciompi, M.W. Wille, M. Naqibullah, E. Scholten, C. Schaefer-Prokop and B. van Ginneken. "Lung-RADS versus the McWilliams nodule malignancy score for risk prediction: an evaluation using lesions from the DLCST Trial", in: World Conference on Lung Cancer, 2015. Abstract

  24. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, A. Dirksen, K. Chung, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Comparing LungRADS and the McWilliams nodule malignancy score: which approach works best to select screen detected pulmonary nodules for more aggressive followup?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  25. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, N. Sverzellati, S. Rossi, A. Dirksen, M. Brink, R. Wittenberg, M. Naqibullah, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Can morphological features differentiate between malignant and benign pulmonary nodules, detected in a screen setting?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  26. A. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi and S. Lam. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT", in: World Conference on Lung Cancer, 2015. Abstract

  27. A. Ritchie, M. Tammemagi, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tsao and S. Lam. "Automated measurement of malignancy risk of lung nodule detected by screening computed tomography", in: World Conference on Lung Cancer, 2015. Abstract

  28. C.I. Sanchez, S. Lambertus, B. Bloemen, N. Bax, F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, T. Theelen and C. Hoyng. "Automatic quantification of geographic atrophy in fundus autofluorescence images of Stargardt patients", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  29. E. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, M. Prokop, H. Gietema and P. de Jong.. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", in: European Congress of Radiology, 2015. Abstract/PDF

  30. I. van Uden, H. van der Holst, A. Tuladhar, A. van Norden, K. de Laat, R. Arntz, M. Ghafoorian, B. Platel, J. Claassen, R. Kessels, E. van Dijk and F. de Leeuw. "Both WMH increase and decline increase the risk of incident dementia; a prospective cohort study: the RUN DMC study", in: European Stroke Organization, 2015.

  31. F.G. Venhuizen, M.B. Breukink, B. van Ginneken, M.J.J.P. van Grinsven, B. Bloemen, C.B. Hoyng, T. Theelen, C.J.F. Boon and C.I. Sanchez. "Automated Quantification of Subretinal Fluid in Central Serous Chorioretinopathy in 3D Optical Coherence Tomography Images", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  32. F.G. Venhuizen, M.J. van Grinsven, C.B. Hoyng, T. Theelen, B. van Ginneken and C.I. Sanchez. "Vendor Independent Cyst Segmentation in Retinal SD-OCT Volumes using a Combination of Multiple Scale Convolutional Neural Networks", in: Medical Image Computing and Computer-Assisted Intervention, 2015. Abstract/PDF

  33. S. Vreemann, A. Gubern-Merida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "A critical audit of a breast MRI screening programme for intermediate and high risk patients in clinical practice", in: European Congress of Radiology, 2015. Abstract

  34. S. Vreemann, A. Gubern-Merida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "Breast cancers not detected by MRI in a high and intermediate risk screening program", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  35. S. Vreemann, A. Gubern-Merida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "Longitudinal results of a breast MRI screening program for patients at high and intermediate risk; does BRCA status matter?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  36. J. Wanders, K. Holland, W. Veldhuis, R. Mann, P. Peeters, C. van Gils and N. Karssemeijer. "Effect of volumetric mammographic density on performance of a breast cancer screening program using full-field digital mammography", in: European Congress of Radiology, 2015. Abstract

  37. J.O.P. Wanders, K. Holland, P.H.M. Peeters, N. Karssemeijer and C.H. van Gils. "Combined effect of dense and nondense breast volume on breast cancer risk", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  38. J.O.P. Wanders, K. Holland, P.H.M. Peeters, N. Karssemeijer and C.H. van Gils. "Volumetric breast density and the risk of screen detected and interval breast cancer", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  39. J.O.P. Wanders, K. Holland, W.B. Veldhuis, R.M. Mann, P.H.M. Peeters, C.H. van Gils and N. Karssemeijer. "Effect of volumetric mammographic density on performance of a breast cancer screening program using full-field digital mammography", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  40. L. Wang, A. Gubern-Merida, O. Diaz, Y. Diez, R.M. Mann, S. Diekmann, F. Zohrer, H. Laue and J. Schwaab. "Automated detection of motion in breast DCE-MRI to assess study quality and prevent unnecessary call-backs", in: ECR, 2015. PDF DOI

  41. L. Wang, A. Gubern-Merida, S.D. Diekmann, R.M. Mann, H.O. Laue and H.K. Hahn. "Automatic Spatial Linking of Lesions in Breast MRI Follow-up Images", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract


Theses

  1. A. Gubern-Merida. "Automated Analysis of Magnetic Resonance Imaging of the Breast", PhD thesis, Radboud University, Nijmegen / Universitat de Girona, Spain, 2015. Abstract/PDF URL

  2. C. Jacobs. "Automatic detection and characterization of pulmonary nodules in thoracic CT images", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL

  3. B. Lassen-Schmidt. "Automatic and Interactive Segmentation of Pulmonary Lobes and Nodules in Chest CT Images", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL

  4. G.J.S. Litjens. "Computerized detection of cancer in multi-parametric prostate MRI", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL

  5. P. Maduskar. "Automated analysis of tuberculosis in chest radiographs", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL

  6. J. Melendez. "Improving computer-aided detection systems through advanced pattern recognition techniques", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL

  7. S. Schalekamp. "Advanced processing in chest radiography: impact on observer performance", PhD thesis, Radboud University, Nijmegen, 2015. Abstract/PDF URL


2014

Papers in international journals

  1. S. Balocco, C. Gatta, F. Ciompi, A. Wahle, P. Radeva, S. Carlier, G. Unal, E. Sanidas, J. Mauri, X. Carillo, T. Kovarnik, C.-W. Wang, H.-C. Chen, T.P. Exarchos, D.I. Fotiadis, F. Destrempes, G. Cloutier, O. Pujol, M. Alberti, E.G. Mendizabal-Ruiz, M. Rivera, T. Aksoy, R.W. Downe and I.A. Kakadiaris. "Standardized evaluation methodology and reference database for evaluating IVUS image segmentation", Computerized Medical Imaging and Graphics 2014;38:70-90. Abstract/PDF DOI PMID 24012215

  2. R. van den Boom, R. Manniesing, M.T.H. Oei, W.-J. van der Woude, E.J. Smit, H.O.A. Laue, B. van Ginneken and M. Prokop. "A 4D Digital Phantom for Patient-Specific Simulation of Brain CT Perfusion Protocols", Medical Physics 2014;41:071907-1 - 071907-9. Abstract/PDF DOI PMID 24989385

  3. J. Bozek, M. Kallenberg, M. Grgic and N. Karssemeijer. "Use of volumetric features for temporal comparison of mass lesions in full field digital mammograms", Medical Physics 2014;41(2):021902. Abstract/PDF DOI PMID 24506623

  4. M. Breuninger, B. van Ginneken, R.H.H.M. Philipsen, F. Mhimbira, J.J. Hella, F. Lwilla, J. van den Hombergh, A. Ross, L. Jugheli, D. Wagner and K. Reither. "Diagnostic accuracy of computer-aided detection of pulmonary tuberculosis in chest radiographs: a validation study from sub-saharan Africa", PLoS One 2014;9(9):e106381. Abstract/PDF DOI PMID 25192172

  5. P. Ciet, P. Wielopolski, R. Manniesing, S. Lever, M. De Bruijne, G. Morana, P. Muzzio, M. Lequin and H. Tiddens. "Spirometer-controlled Cine-Magnetic Resonance Imaging for Diagnosis of Tracheobronchomalacia in Pediatric Patients", European Respiratory Journal 2014;43(1):115-124. Abstract/PDF DOI PMID 23598953

  6. F. Ciompi, O. Pujol and P. Radeva. "ECOC-DRF: Discriminative Random Fields based on Error-Correcting Output Codes", Pattern Recognition 2014;47:2193-2204. Abstract/PDF DOI

  7. G. Deslee, K. Klooster, M. Hetzel, F. Stanzel, R. Kessler, C.-H. Marquette, C. Witt, S. Blaas, W. Gesierich, F.J.F. Herth, J. Hetzel, E.M. van Rikxoort and D.-J. Slebos. "Lung volume reduction coil treatment for patients with severe emphysema: a European multicentre trial", Thorax 2014;69(11):980-986. Abstract/PDF DOI PMID 24891327

  8. S. Dettmer, L. Peters, C. de Wall, C. Schaefer-Prokop, M. Schmidt, G. Warnecke, J. Gottlieb, F. Wacker and H.-O. Shin. "Bronchial wall measurements in patients after lung transplantation: evaluation of the diagnostic value for the diagnosis of bronchiolitis obliterans syndrome", PLoS One 2014;9(4):e93783. Abstract/PDF DOI PMID 24713820

  9. B. Durmus, D. Heppe, H. Taal, R. Manniesing, H. Raat, A. Hofman, E. Steegers, R. Gaillard and V. Jaddoe. "Parental Smoking During Pregnancy and Total and Abdominal Fat Distribution in School-age Children: the Generation R Study", International Journal of Obesity 2014;38(7):966-972. Abstract/PDF DOI PMID 24448598

  10. B. Durmus, D.H. Heppe, O. Gishti, R. Manniesing, M. Abrahamse-Berkeveld, E.M. van der Beek, A. Hofman, L. Duijts, R. Gaillard and V.W. Jaddoe. "General and abdominal fat outcomes in school-age children associated with infant breastfeeding patterns", American Journal of Clinical Nutrition 2014;12(6):1351-1358. Abstract/PDF DOI PMID 24622802

  11. C. Gatta and F. Ciompi. "Stacked sequential scale-space Taylor context", IEEE Transactions on Pattern Analysis and Machine Intelligence 2014;36(8):1694-1700. Abstract/PDF DOI PMID 26353349

  12. O. Gishti, R. Gaillard, R. Manniesing, M. Abrahamse-Berkeveld, E.M. van der Beek, D.H. Heppe, E.A. Steegers, A. Hofman, L. Duijts, B. Durmus and V.W. Jaddoe. "Fetal and infant growth patterns associated with total and abdominal fat distribution in school-age children", Journal of Clinical Endocrinology and Metabolism 2014;99(7):2557-2566. Abstract/PDF DOI PMID 24712569

  13. A. Gubern-Merida, M. Kallenberg, B. Platel, R. Mann, R. Marti and N. Karssemeijer. "Volumetric breast density estimation from Full-Field Digital Mammograms: A validation study", PLoS One 2014;9(1):e85952. Abstract/PDF DOI PMID 24465808

  14. N. Horeweg, J. van Rosmalen, M.A. Heuvelmans, C.M. van der Aalst, R. Vliegenthart, E.T. Scholten, K. ten Haaf, K. Nackaerts, J.-W.J. Lammers, C. Weenink and others. "Lung cancer probability in patients with CT-detected pulmonary nodules: a prespecified analysis of data from the NELSON trial of low-dose CT screening", Lancet Oncology 2014;15(12):1332-1341. Abstract/PDF DOI PMID 25282285

  15. N. Horeweg, E.T. Scholten, P.A. de Jong, C.M. van der Aalst, C. Weenink, J.-W.J. Lammers, K. Nackaerts, R. Vliegenthart, K. Ten Haaf, U.A. Yousaf-Khan, M.A. Heuvelmans, E. Thunnissen, M. Oudkerk, W. Mali and H.J. de Koning. "Detection of lung cancer through low-dose CT screening (NELSON): a prespecified analysis of screening test performance and interval cancers", Lancet Oncology 2014;15(12):1342-1350. Abstract/PDF DOI PMID 25282284

  16. C. Jacobs, E.M. van Rikxoort, T. Twellmann, E.T. Scholten, P.A. de Jong, J.M. Kuhnigk, M. Oudkerk, H.J. de Koning, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Automatic Detection of Subsolid Pulmonary Nodules in Thoracic Computed Tomography Images", Medical Image Analysis 2014;18:374-384. Abstract/PDF DOI PMID 24434166

  17. Y. de Jong, J.H.F.M. Pinckaers, R.M. ten Brinck, A.A. Lycklama a Nijeholt and O.M. Dekkers. "Urinating standing versus sitting: position is of influence in men with prostate enlargement. A systematic review and meta-analysis", PLoS One 2014;9(7):e101320. PDF DOI PMID 25051345

  18. Y. de Jong, J.H.F.M. Pinckaers, R.M. ten Brinck and A.A.B. Lycklama a Nijeholt. "Invloed van mictiehouding op urodynamische parameters bij mannen: een literatuuronderzoek", Tijdschrift voor Urologie 2014;4(1):36-42. Abstract/PDF DOI

  19. G. Karemore, M. Nielsen, N. Karssemeijer and S.S. Brandt. "A method to determine the mammographic regions that show early changes due to the development of breast cancer", Physics in Medicine and Biology 2014;59(22):6759-6773. Abstract/PDF DOI PMID 25327697

  20. K. Klooster, N. ten Hacken, I. Franz, H. Kerstjens, E.M. van Rikxoort and D.J. Slebos. "Lung Volume Reduction Coil Treatment in Chronic Obstructive Pulmonary Disease Patients with Homogeneous Emphysema: A Prospective Feasibility Trial", Respiration 2014;88(2):116-125. Abstract/PDF DOI PMID 24902999

  21. T.T.J.P. Kockelkorn, C.M. Schaefer-Prokop, G. Bozovic, A. Muñoz-Barrutia, E.M. van Rikxoort, M.S. Brown, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Interactive lung segmentation in abnormal human and animal chest CT scans", Medical Physics 2014;41(8):081915. Abstract/PDF DOI PMID 25086546

  22. G. Litjens, O. Debats, J. Barentsz, N. Karssemeijer and H. Huisman. "Computer-aided detection of prostate cancer in MRI", IEEE Transactions on Medical Imaging 2014;33(5):1083-1092. Abstract/PDF DOI PMID 24770913

  23. G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, G. Guillard, N. Birbeck, J. Zhang, R. Strand, F. Malmberg, Y. Ou, C. Davatzikos, M. Kirschner, F. Jung, J. Yuan, W. Qiu, Q. Gao, P.E. Edwards, B. Maan, F. van der Heijden, S. Ghose, J. Mitra, J. Dowling, D. Barratt, H. Huisman and A. Madabhushi. "Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge", Medical Image Analysis 2014;18(2):359-373. Abstract/PDF DOI PMID 24418598

  24. G.J. Litjens, H.J. Huisman, R.M. Elliott, N.N. Shih, M.D. Feldman, S. Viswanath, J.J. Fütterer, J.G. Bomers and A. Madabhushi. "Quantitative identification of magnetic resonance imaging features of prostate cancer response following laser ablation and radical prostatectomy", Journal of Medical Imaging 2014;1(3):035001-035001. PDF DOI PMID 26158070

  25. H. Liu, T. Tan, J. van Zelst, R. Mann, N. Karssemeijer and B. Platel. "Incorporating texture features in a computer-aided breast lesion diagnosis system for automated three-dimensional breast ultrasound", Journal of Medical Imaging 2014;1(2):024501-024501. Abstract/PDF DOI

  26. L. Louzao Martinez, E. Friedlander, J.A.W.M. van der Laak and K.M. Hebeda. "Abundance of IgG4+ Plasma Cells in Isolated Reactive Lymphadenopathy Is No Indication of IgG4-Related Disease", American Journal of Clinical Pathology 2014;142:459-466. Abstract/PDF DOI

  27. P. Maduskar, L. Hogeweg, P.A. de Jong, L. Peters-Bax, R. Dawson, H. Ayles, C.I. Sanchez and B. van Ginneken. "Cavity contour segmentation in chest radiographs using supervised learning and dynamic programming", Medical Physics 2014;41(7):071912-1 - 071912-15. Abstract/PDF DOI PMID 24989390

  28. R.M. Mann, R.D. Mus, J. van Zelst, C. Geppert, N. Karssemeijer and B. Platel. "A Novel Approach to Contrast-Enhanced Breast Magnetic Resonance Imaging for Screening: High-Resolution Ultrafast Dynamic Imaging", Investigative Radiology 2014;49(9):579-585. Abstract/PDF DOI PMID 24691143

  29. J. Melendez, C.I. Sanchez, B. van Ginneken and N. Karssemeijer. "Improving mass candidate detection in mammograms via feature maxima propagation and local feature selection", Medical Physics 2014;41(8):081904. Abstract/PDF DOI PMID 25086535

  30. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, O.M. Mets, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Contribution of CT Quantified Emphysema, Air Trapping and Airway Wall Thickness on Pulmonary Function in Male Smokers With and Without COPD", COPD 2014;11(5):503-509. Abstract/PDF DOI PMID 25093696

  31. F.A.A. Mohamed Hoesein, M. Schmidt, O.M. Mets, H.A. Gietema, J.-W.J. Lammers, P. Zanen, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, I. Išgum, M. Prokop, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Discriminating dominant computed tomography phenotypes in smokers without or with mild COPD", Respiratory Medicine 2014;108:136-143. Abstract/PDF DOI PMID 24035313

  32. S.E.A. Muenzing, B. van Ginneken, M.A. Viergever and J.P.W. Pluim. "DIRBoost-An algorithm for boosting deformable image registration: Application to lung CT intra-subject registration", Medical Image Analysis 2014;18(3):449-459. Abstract/PDF DOI PMID 24556079

  33. M. Muyoyeta, P. Maduskar, M. Moyo, N. Kasese, D. Milimo, R. Spooner, N. Kapata, L. Hogeweg, B. van Ginneken and H. Ayles. "The Sensitivity and Specificity of Using a Computer Aided Diagnosis Program for Automatically Scoring Chest X-Rays of Presumptive TB Patients Compared with Xpert MTB/RIF in Lusaka Zambia", PLoS One 2014;9(4):e93757. Abstract/PDF DOI PMID 24705629

  34. B. Platel, R. Mus, T. Welte, N. Karssemeijer and R. Mann. "Automated Characterization of Breast Lesions Imaged with an Ultrafast DCE-MR Protocol", IEEE Transactions on Medical Imaging 2014:225-232. Abstract/PDF DOI PMID 24058020

  35. A. Poncela and L. Gallardo-Estrella. "Command-based voice teleoperation of a mobile robot via a human-robot interface", Robotica 2014:1-18. PDF DOI

  36. R. Rissmann, J.H.F.M. Pinckaers, A.J.M. de Man, A.C. Cohen and E.A. Dubois. "Pharmacology E-learning 2.0 - Web vs. App", British Journal of Clinical Pharmacology 2014;78(4):772. PDF DOI

  37. R.D. Rudyanto, S. Kerkstra, E.M. van Rikxoort, C. Fetita, P.-Y. Brillet, C. Lefevre, W. Xue, X. Zhu, J. Liang, I. Öksüz, D. Ünay, K. Kadipasaoglu, R.S.J. Estepar, J.C. Ross, G.R. Washko, J.-C. Prieto, M.H. Hoyos, M. Orkisz, H. Meine, M. Hüllebrand, C. Stöcker, F.L. Mir, V. Naranjo, E. Villanueva, M. Staring, C. Xiao, B.C. Stoel, A. Fabijanska, E. Smistad, A.C. Elster, F. Lindseth, A.H. Foruzan, R. Kiros, K. Popuri, D. Cobzas, D. Jimenez-Carretero, A. Santos, M.J. Ledesma-Carbayo, M. Helmberger, M. Urschler, M. Pienn, D.G. Bosboom, A. Campo, M. Prokop, P.A. de Jong, C.O. de Solorzano, A. Muñoz-Barrutia and B. van Ginneken. "Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study", Medical Image Analysis 2014;18:1217-1232. Abstract/PDF DOI PMID 25113321

  38. N. Saksens, E. Kersten, J.M.M. Groenewoud, M.J.J.P. van Grinsven, J.P.H. van de Ven, C.I. Sanchez, T. Schick, S. Fauser, A. den Hollander, C. Hoyng and C.J.F. Boon. "Clinical characteristics of familial and sporadic age-related macular degeneration: differences and similarities", Investigative Ophthalmology and Visual Science 2014;55:7085-7092. Abstract/PDF DOI PMID 25301878

  39. C. Schaefer-Prokop. "[HRCT patterns of the most important interstitial lung diseases]", Radiologe 2014;54(12):1170-1179. Abstract/PDF DOI PMID 25503518

  40. C. Schaefer-Prokop, H. Prosch and M. Prokop. "[Lung cancer screening. What have we learnt for the practice so far?]", Radiologe 2014;54(5):462-469. Abstract/PDF DOI PMID 24824379

  41. S. Schalekamp, B. van Ginneken, I.A.H. van den Berk, I.J.C. Hartmann, M.M. Snoeren, A.E. Odink, W. van Lankeren, S.A.H. Pegge, L.J. Schijf, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppression increases the visibility of invasive pulmonary aspergillosis in chest radiographs", PLoS One 2014;9(10):e108551. Abstract/PDF DOI PMID 25279774

  42. S. Schalekamp, B. van Ginneken, B. Heggelman, M. Imhof-Tas, I. Somers, M. Brink, M. Spee, C. Schaefer-Prokop and N. Karssemeijer. "New methods for using computer-aided detection information for the detection of lung nodules on chest radiographs", British Journal of Radiology 2014;87(1036):20140015. Abstract/PDF DOI PMID 24625084

  43. S. Schalekamp, B. van Ginneken, N. Karssemeijer and C.M. Schaefer-Prokop. "Chest radiography: new technological developments and their applications", Seminars in Respiratory and Critical Care Medicine 2014;35(1):3-16. Abstract/PDF DOI PMID 24481755

  44. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone suppressed images", Radiology 2014;272(1):252-261. Abstract/PDF DOI PMID 24635675

  45. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer-aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone-suppressed images", Radiology 2014;272(1):252-261. Abstract/PDF DOI PMID 24635675

  46. S. Schalekamp, B. van Ginneken, C.M. Schaefer-Prokop and N. Karssemeijer. "Influence of study design in receiver operating characteristics studies: sequential versus independent reading", Journal of Medical Imaging 2014;1(1):015501-015501. Abstract/PDF DOI

  47. S. van der Wal, M. Vaneker, M. Steegers, van Berkum B, M. Kox, J. van der Laak, J. van der Hoeven, K. Vissers and G.J. Scheffer. "Lidocaine increases the anti-inflammatory cytokine IL-10 following mechanical ventilation in healthy mice", Acta Anaesthesiologica Scandinavica 2014;59:47-55. Abstract/PDF DOI


Papers in conference proceedings

  1. Y. Diez, A. Gubern-Merida, L. Wang, S. Diekmann, J. Marti, B. Platel, J. Kramme and R. Marti. "Comparison of Methods for Current-to-Prior Registration of Breast DCE-MRI", in: IWDM '14: Proceedings of the 12th international workshop on Digital Mammography, volume 8539, 2014, pages 689-695. PDF DOI

  2. B. Ehteshami Bejnordi, N. Timofeeva, I. Otte-Höller, N. Karssemeijer and J. van der Laak. "Quantitative analysis of stain variability in histology slides and an algorithm for standardization", in: Medical Imaging of Proceedings of the SPIE, 2014. Abstract/PDF DOI

  3. K. Holland, M. Kallenberg, R. Mann, C. van Gils and N. Karssemeijer. "Stability of Volumetric Tissue Composition Measured in Serial Screening Mammograms", in: Breast Imaging -12th International Workshop, IWDM 2014, Gifu City, Japan, June 29 AC/a,!aEURoe July 2, 2014. Proceedings, volume 8539 of Lecture Notes in Computer Science, 2014. PDF DOI

  4. C. Jacobs, S.H.T. Opdam, E.M. van Rikxoort, O.M. Mets, J. Rooyackers, P.A. de Jong, M. Prokop and B. van Ginneken. "Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351I. Abstract/PDF DOI

  5. G. Litjens, R. Elliott, N. Shih, M. Feldman, J. Barentsz, C. Hulsbergen van de Kaa, I. Kovacs, H. Huisman and A. Madabhushi. "Distinguishing prostate cancer from benign confounders via a cascaded classifier on multi-parametric MRI", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 903512. Abstract/PDF DOI

  6. G. Litjens, H. Huisman, R. Elliott, N. Shih, M. Feldman, Fütterer, J. Bomers and A. Madabhushi. "Distinguishing benign confounding treatment changes from residual prostate cancer on MRI following laser ablation", in: Medical Imaging, volume 9036 of Proceedings of the SPIE, 2014, page 90361D. Abstract/PDF DOI

  7. Q. Mahmood, A. Chodorowski, B. Ehteshami Bejnordi and M. Persson. "A fully automatic unsupervised segmentation framework for the brain tissues in MR images", in: Medical Imaging of Proceedings of the SPIE, 2014. Abstract/PDF DOI

  8. J. Melendez, C.I. Sanchez, R.H.H.M. Philipsen, P. Maduskar and B. van Ginneken. "Multiple-instance learning for computer-aided detection of tuberculosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351J. Abstract/PDF DOI

  9. J.-J. Mordang, J. Hauth, G. den Heeten and N. Karssemeijer. "Automated Labeling of Screening Mammograms with Arterial Calcifications", in: Breast Imaging, volume 8539 of Lecture Notes in Computer Science, 2014. PDF DOI

  10. S.P. Rabbani, P. Maduskar, R.H.H.M. Philipsen, L. Hogeweg and B. van Ginneken. "Effect of image variation on computer aided detection systems", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, pages 90352H-1-90352H-8. Abstract/PDF DOI


Abstracts

  1. F. Ciompi, B. de Hoop, C. Jacobs, M. Prokop, P. a de Jong and B. van Ginneken. "Automatic Classification of Perifissural Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract/PDF

  2. L. Gallardo-Estrella, E. Pompe, F.A. Mohamed Hoesein, P. De Jong, B. van Ginneken, E.M. van Rikxoort, H. de Koning, M. Oudkerk and J. Lammers. "Relationship between Lung Function Parameters and CT Measurements of Emphysema, Airways, and Tracheal Collapse in Subjects with Mild COPD", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  3. B. van Ginneken, C. Jacobs, E.T. Scholten, M. Prokop and P.A. de Jong. "Feasibility of Rapid Reading of CT Lung Cancer Screening with Computer-Aided Detection Support", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  4. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, T. Theelen, C.C.W. Klaver and C.I. Sanchez. "Automatic detection of reticular drusen using multimodal retinal image analysis", in: Association for Research in Vision and Ophthalmology, 2014. Abstract

  5. A. Khan, A. Zaidi, R. Philipsen, S. Khowaja, B. van Ginneken, A. Khan and T. Dossul. "Detection of Chest X-ray abnormalities and tuberculosis using computer-aided detection vs interpretation by radiologists and a clinical officer", in: 45th World Conference on Lung Health, 2014. Abstract/PDF URL

  6. B.C. Lassen, J. Kuhnigk, C. Jacobs, E.M. van Rikxoort and B. van Ginneken. "Fully Automatic Volumetric Segmentation of Pulmonary Nodules: Evaluation using the Complete LIDC/IDRI Database", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  7. G. Litjens, N. Karssemeijer, J.O. Barentsz and H. Huisman. "Computer-aided Detection of Prostate Cancer in Multi-parametric Magnetic Resonance Imaging", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  8. M.T.H. Oei, R. Manniesing, F.J.A. Meijer and M. Prokop. "One-Step-Stroke Imaging: Does an Interleaved Acquisition of Cerebral CT Perfusion and CTA of the Carotids Affect CTP Values", in: European Congress of Radiology, 2014. Abstract

  9. M.T.H. Oei, R. Manniesing, W.-J. van der Woude. Rieneke and van den Boom, B. van Ginneken, F.J.A. Meijer and M. Prokop. "One-Step-Stroke CT Imaging - Part I: Optimization of Interleaved Acquisition of Cerebral CT Perfusion and Neck CT Angiography", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  10. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sanchez and B. van Ginneken. "Robust Computer-Aided Detection of Tuberculosis in Chest Radiographs Using Energy Normalization", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  11. S. Schalekamp, I. van den Berk, I. Hartmann, M. Snoeren, A. Odink, S. Pegge, L. Schijf, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppressed images improve pulmonary fungal infection detection in chest radiographs", in: European Congress of Radiology, 2014. Abstract

  12. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. "Double reading improves detection of small lung tumors in chest radiographs: can a computer aided detection system replace the second reader?", in: European Congress of Radiology, 2014. Abstract

  13. M. Schmidt, E.M.V. Rikxoort, J. Kuhnigk, P.F. Judy and B. van Ginneken. "Subvoxel Accurate Airway Wall Measurements using an Intensity Integration Approach: Comparative Study using the COPDGene Phantom", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  14. A.A.A. Setio, J. Gelderblom, C. Jacobs and B. van Ginneken. "Automatic Detection of Large Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  15. A. Steiner, F. Mhimbira, J. van den Hombergh, P. Clowes, C. Mangu, B. van Ginneken, M. Hoelscher and K. Reither. "Computer-aided diagnosis of X-rays in a screening for pulmonary tuberculosis of a prison population in Tanzania", in: 45th World Conference on Lung Health, 2014. Abstract

  16. W.J.M. van de Ven, S. Rinsma, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Electro-magnetic tracker-based fusion for image-guided TRUS prostate biopsy", in: European Congress of Radiology, 2014. Abstract

  17. E. Vos, T. Kobus, G. Litjens, T. Hambrock, C.H. van de Kaa, M. Maas and T. Scheenen. "Multiparametric MR imaging for the assessment of prostate cancer aggressiveness at 3 Tesla", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2014.

  18. A. Zaidi, N. Khalid, R. Philipsen, B. van Ginneken, S. Khowaja and A. Khan. "Symptomatic screening and computer-aided radiography for active-case finding of tuberculosis: a prediction model for TB case detection", in: 45th World Conference on Lung Health, 2014. Abstract


Theses

  1. S.E.A. Muenzing. "Learning-based approaches to deformable image registration", PhD thesis, Utrecht University, 2014. Abstract/PDF URL

  2. G. van Schie. "Image Computing Methods for Accurate and Efficient Interpretation of Digital Breast Tomosynthesis", PhD thesis, Radboud University, Nijmegen, 2014. PDF URL

  3. E.T. Scholten. "SubSolid Nodules in lung cancer screening", PhD thesis, 2014. Abstract/PDF URL

  4. T. Tan. "Automated 3D Breast Ultrasound Image Analysis", PhD thesis, Radboud University, Nijmegen, 2014. PDF URL


2013

Papers in international journals

  1. R. Brecheisen, B. Platel, B.M. ter Haar Romeny and A. Vilanova. "Illustrative uncertainty visualization of DTI fiber pathways", Visual Computer 2013;29:297-309. Abstract/PDF DOI

  2. A. Bria, N. Karssemeijer and F. Tortorella. "Learning from unbalanced data: A cascade-based approach for detecting clustered microcalcifications", Medical Image Analysis 2013;18(2):241-252. Abstract/PDF DOI PMID 24292553

  3. A.E. Dijkstra, D.S. Postma, N. Ten Hacken, J.M. Vonk, M. Oudkerk, P.M. van Ooijen, P. Zanen, F.A.A. Mohamed Hoesein, B. van Ginneken, M. Schmidt and H.J. Groen. "Low-dose CT measurements of airway dimensions and emphysema associated with airflow limitation in heavy smokers: a cross sectional study", Respiratory Research 2013;14(11):1-9. Abstract/PDF DOI PMID 23356533

  4. N. Fens, A.G.J. van Rossum, P. Zanen, B. van Ginneken, R.J. van Klaveren, A.H. Zwinderman and P.J. Sterk. "Subphenotypes of Mild-to-Moderate COPD by Factor and Cluster Analysis of Pulmonary Function, CT Imaging and Breathomics in a Population-Based Survey", COPD 2013;10:277-285. Abstract/PDF DOI PMID 23536961

  5. A. Firouzian, R. Manniesing, C.T. Metz, R. Risselada, S. Klein, F. van Kooten, M.C.J.M. Sturkenboom, A. van der Lugt and W.J. Niessen. "Quantification of Intracranial Aneurysm Morphodynamics from ECG-gated CT Angiography", Academic Radiology 2013;20(1):52-58. Abstract/PDF DOI PMID 22884403

  6. M.L. Giger, N. Karssemeijer and J.A. Schnabel. "Breast Image Analysis for Risk Assessment, Detection, Diagnosis, and Treatment of Cancer", Annual Review of Biomedical Engineering 2013;15:327-57. Abstract/PDF DOI PMID 23683087

  7. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Automatic Drusen Quantification and Risk Assessment of Age-related Macular Degeneration on Color Fundus Images", Investigative Ophthalmology and Visual Science 2013;54(4):3019-3027. Abstract/PDF DOI PMID 23572106

  8. T. Hambrock, P.C. Vos, C.A. Hulsbergen-van de Kaa, J.O. Barentsz and H.J. Huisman. "Prostate Cancer: Computer-aided Diagnosis with Multiparametric 3-T MR Imaging--Effect on Observer Performance", Radiology 2013;266:521-530. Abstract/PDF DOI PMID 23204542

  9. R. Hameeteman, S. Rozie, C. Metz, R. Manniesing, T. van Walsum, A. van der Lugt, W. Niessen and S. Klein. "Automated Carotid Artery Distensibility Measurements from CTA using Nonrigid Registration", Medical Image Analysis 2013;17:515-24. Abstract/PDF DOI PMID 23602917

  10. L. Hogeweg, C.I. Sanchez and B. van Ginneken. "Suppression of translucent elongated structures: applications in chest radiography", IEEE Transactions on Medical Imaging 2013;32(11):2099-2113. Abstract/PDF DOI PMID 23880041

  11. L. Hogeweg, C.I. Sanchez, J. Melendez, P. Maduskar, A. Story, A. Hayward and B. van Ginneken. "Foreign object detection and removal to improve automated analysis of chest radiographs", Medical Physics 2013;40(7):071901. Abstract/PDF DOI PMID 23822438

  12. N. Horeweg, C.M. van der Aalst, E. Thunnissen, K. Nackaerts, C. Weenink, H.J.M. Groen, J.-W.J. Lammers, J.G. Aerts, E.T. Scholten, J. van Rosmalen, W. Mali, M. Oudkerk and H.J. de Koning. "Characteristics of lung cancers detected by computer tomography screening in the randomized NELSON trial", American Journal of Respiratory and Critical Care Medicine 2013;187(8):848-854. Abstract/PDF DOI PMID 23348977

  13. N. Horeweg, C.M. van der Aalst, R. Vliegenthart, Y. Zhao, X. Xie, E.T. Scholten, W. Mali, E. Thunnissen, C. Weenink, H.J.M. Groen, J.-W.J. Lammers, K. Nackaerts, J. van Rosmalen, M. Oudkerk and H.J. de Koning. "Volumetric computed tomography screening for lung cancer: three rounds of the NELSON trial", European Respiratory Journal 2013;42(6):1659-1667. Abstract/PDF DOI PMID 23845716

  14. J. Huo, K. Okada, E.M. van Rikxoort, H.J. Kim, J.R. Alger, W.B. Pope, J.G. Goldin and M.S. Brown. "Ensemble segmentation for GBM brain tumors on MR images using confidence-based averaging", Medical Physics 2013;40(9):093502. Abstract/PDF DOI PMID 24007185

  15. R. Hupse, M. Samulski, M. Lobbes, A. den Heeten, M.W. Imhof-Tas, D. Beijerinck, R. Pijnappel, C. Boetes and N. Karssemeijer. "Standalone computer-aided detection compared to radiologists' performance for the detection of mammographic masses", European Radiology 2013;23:93-100. Abstract/PDF DOI PMID 22772149

  16. R. Hupse, M. Samulski, M.B. Lobbes, R.M. Mann, R. Mus, G.J. den Heeten, D. Beijerinck, R.M. Pijnappel, C. Boetes and N. Karssemeijer. "Computer-aided Detection of Masses at Mammography: Interactive Decision Support versus Prompts", Radiology 2013;266:123-129. Abstract/PDF DOI PMID 23091171

  17. B. Lassen, E.M. van Rikxoort, M. Schmidt, S. Kerkstra, B. van Ginneken and J. Kuhnigk. "Automatic segmentation of the pulmonary lobes from chest CT scans based on fissures, vessels, and bronchi", IEEE Transactions on Medical Imaging 2013;32(2):210-222. Abstract/PDF DOI PMID 23014712

  18. P. Maduskar, M. Muyoyeta, H. Ayles, L. Hogeweg, L. Peters-Bax and B. van Ginneken. "Detection of tuberculosis with digital chest radiography: automatic reading versus interpretation by clinical officers", International Journal of Tuberculosis and Lung Disease 2013;17(12):1613-1620. Abstract/PDF DOI PMID 24200278

  19. O.M. Mets, P.A. de Jong, B. van Ginneken, C.L.J.J. Kruitwagen, M. Prokop, M. Oudkerk, J.-W.J. Lammers and P. Zanen. "CT Air Trapping Is Independently Associated with Lung Function Reduction over Time", PLoS One 2013;8(4):e61783. Abstract/PDF DOI PMID 23613934

  20. O.M. Mets, M. Schmidt, C.F. Buckens, M.J. Gondrie, I. Išgum, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, M. Prokop, J.J. Lammers, P. Zanen, F.A.A. Mohamed Hoesein, W.P. Mali, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Diagnosis of chronic obstructive pulmonary disease in lung cancer screening Computed Tomography scans: independent contribution of emphysema, air trapping and bronchial wall thickening", Respiratory Research 2013;14(1):59. Abstract/PDF DOI PMID 23711184

  21. O.M. Mets, R. Vliegenthart, M.J. Gondrie, M.A. Viergever, M. Oudkerk, H.J. de Koning, W.P.T.M. Mali, M. Prokop, R.J. van Klaveren, Y. van der Graaf, C.F.M. Buckens, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, I. Išgum and P.A. de Jong. "Lung Cancer Screening CT-Based Prediction of Cardiovascular Events", JACC Cardiovascular Imaging 2013;6:899-907. Abstract/PDF DOI PMID 23769488

  22. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Computed tomography structural lung changes in discordant airflow obstruction", PLoS One 2013;8(6):e65177. Abstract/PDF DOI PMID 23785411

  23. F.A.A. Mohamed Hoesein, P. Zanen, P.A. de Jong, B. van Ginneken, H.M. Boezen, H.J. Groen, M. Oudkerk, H.J. de Koning, D.S. Postma and J.-W.J. Lammers. "Rate of progression of CT-quantified emphysema in male current and ex-smokers: a follow-up study", Respiratory Research 2013;14(1):55. Abstract/PDF DOI PMID 23688060

  24. D.P. Naidich, A.A. Bankier, H. MacMahon, C.M. Schaefer-Prokop, M. Pistolesi, J.M. Goo, P. Macchiarini, J.D. Crapo, C.J. Herold, J.H. Austin and W.D. Travis. "Recommendations for the management of subsolid pulmonary nodules detected at CT: a statement from the Fleischner Society", Radiology 2013;266(1):304-317. Abstract/PDF DOI PMID 23070270

  25. R. van der Post, J. van der Laak, B. Sturm, R. Clarijs, E. Schaafsma, H. van Krieken and M. Nap. "The evaluation of colon biopsies using virtual microscopy is reliable", Histopathology 2013;63:114-121. Abstract/PDF DOI

  26. H. Prosch and C. Schaefer-Prokop. "[Radiological evaluation of incidental pulmonary nodules]", Radiologe 2013;53(7):623-638. Abstract/PDF DOI PMID 23873184

  27. H. Prosch, C.M. Schaefer-Prokop, E. Eisenhuber, D. Kienzl and C.J. Herold. "CT protocols in interstitial lung diseases-A survey among members of the European Society of Thoracic Imaging and a review of the literature", European Radiology 2013;33:1553-1563. Abstract/PDF DOI PMID 23239063

  28. E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review", Physics in Medicine and Biology 2013;58:R187-R220. Abstract/PDF DOI PMID 23956328

  29. S. Schalekamp, B. van Ginneken, L. Meiss, L. Peters-Bax, L.G.B.A. Quekel, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppressed images improve radiologists' detection performance for pulmonary nodules in chest radiographs", European Journal of Radiology 2013;82(12):2399-2405. Abstract/PDF DOI PMID 24113431

  30. G. van Schie, R. Mann, M. Imhof-Tas and N. Karssemeijer. "Generating synthetic mammograms from reconstructed tomosynthesis volumes", IEEE Transactions on Medical Imaging 2013;32(12):2322-2331. Abstract/PDF DOI PMID 24058019

  31. G. van Schie, M.G. Wallis, K. Leifland, M. Danielsson and N. Karssemeijer. "Mass detection in reconstructed digital breast tomosynthesis volumes with a computer-aided detection system trained on 2D mammograms", Medical Physics 2013;40(4):041902. Abstract/PDF DOI PMID 23556896

  32. E.T. Scholten, B. de Hoop, C. Jacobs, S. van Amelsvoort-van de Vorst, R.J. van Klaveren, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, W.T.M. Mali, H.A. Gietema, M. Prokop, B. van Ginneken and P.A. de Jong. "Semi-automatic quantification of subsolid pulmonary nodules: comparison with manual measurements", PLoS One 2013;8(11):e80249. Abstract/PDF DOI PMID 24278264

  33. E.T. Scholten, C. Jacobs, B. van Ginneken, M.J. Willemink, J.-M. Kuhnigk, P.M.A. van Ooijen, M. Oudkerk, W.P.T.M. Mali and P.A. de Jong. "Computer-Aided Segmentation and Volumetry of Artificial Ground-Glass Nodules at Chest CT", American Journal of Roentgenology 2013;201(2):295-300. Abstract/PDF DOI PMID 23883209

  34. E.T. Scholten, W.P.T.M. Mali, M. Prokop, B. van Ginneken, R. Glandorf, R. van Klaveren, M. Oudkerk and P.A. de Jong. "Non-solid lung nodules on low-dose computed tomography: comparison of detection rate between 3 visualization techniques", Cancer Imaging 2013;13(2):150-154. Abstract/PDF DOI PMID 23598304

  35. E.J. Smit, E.-J. Vonken, T. van Seeters, J.W. Dankbaar, I.C. van der Schaaf, L.J. Kappelle, B. van Ginneken, B.K. Velthuis and M. Prokop. "Timing-Invariant Imaging of Collateral Vessels in Acute Ischemic Stroke", Stroke 2013;44:2194-2199. Abstract/PDF DOI PMID 23760216

  36. A. Srikantha, M. Harz, L. Wang, B. Platel, R.M. Mann, H.K. Hahn and H.-O. Peitgen. "Symmetry-based detection of ductal carcinoma in situ in breast MRI", European Journal of Radiology 2013;81 Suppl 1:S158-S159. PDF DOI PMID 23083573

  37. T. Tan, B. Platel, R.M. Mann, H. Huisman and N. Karssemeijer. "Chest Wall Segmentation in Automated 3D Breast Ultrasound Scans", Medical Image Analysis 2013;17:1273AC/a,!aEURoe1281. Abstract/PDF DOI PMID 23273891

  38. T. Tan, B. Platel, R. Mus, L. Tabar, R. Mann and N. Karssemeijer. "Computer-aided Detection of Cancer in Automated 3D Breast Ultrasound", IEEE Transactions on Medical Imaging 2013;32:1698-1706. Abstract/PDF DOI PMID 23693128

  39. T. Tan, B. Platel, T. Twellmann, G. van Schie, R. Mus, A. Grivegnee, R.M. Mann and N. Karssemeijer. "Evaluation of the Effect of Computer-Aided Classification of Benign and Malignant Lesions on Reader Performance in Automated Three-dimensional Breast Ultrasound", Academic Radiology 2013;20(11):1381-1388. Abstract/PDF DOI PMID 24119350

  40. M. Velikova, P.J.F. Lucas, M. Samulski and N. Karssemeijer. "On the interplay of machine learning and background knowledge in image interpretation by Bayesian Networks", Artificial Intelligence in Medicine 2013;57:73AC/a,!aEURoe86. Abstract/PDF DOI PMID 23395008

  41. W.J.M. van de Ven and J.O. Barentsz. "Prostate cancer: MRI/US-guided biopsy -- a viable alternative to TRUS-guidance", Nature Reviews Urology 2013;10:559-560. PDF DOI PMID 23938941

  42. W.J.M. van de Ven, C.A. Hulsbergen-van de Kaa, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Simulated required accuracy of image registration tools for targeting high-grade cancer components with prostate biopsies", European Radiology 2013;23(5):1401-1407. Abstract/PDF DOI PMID 23138386

  43. E.K. Vos, G. Litjens, T. Kobus, T. Hambrock, C.A. Kaa, J.O. Barentsz, H. Huisman and T.W. Scheenen. "Assessment of Prostate Cancer Aggressiveness Using Dynamic Contrast-enhanced Magnetic Resonance Imaging at 3T", European Urology 2013;64:448-455. PDF URL PMID 23751135


Papers in conference proceedings

  1. A. van der Avoird, N. Lin, B. van Ginneken and R. Manniesing. "A Hardware Implementation of a Levelset Algorithm for Carotid Lumen Segmentation in CTA", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  2. J. Charbonnier, E.J. Smit, M.A. Viergever, B.K. Velthuis and P.C. Vos. "Computer-aided diagnosis of acute ischemic stroke based on cerebral hypoperfusion using 4D CT angiography", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  3. F. Ciompi, S. Balocco, C. Caus, J. Mauri and P. Radeva. "Stent Shape Estimation through a Comprehensive Interpretation of Intravascular Ultrasound Images", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2013, pages 345-352. Abstract/PDF

  4. F. Ciompi, R. Hua, S. Balocco, M. Alberti, O. Pujol, C. Caus, J. Mauri and P. Radeva. "Learning to Detect Stent Struts in Intravascular Ultrasound", in: Pattern Recognition and Image Analysis, 2013, pages 575-583. Abstract/PDF URL

  5. B. Ehteshami Bejnordi, R. Moshavegh, K. Sujathan, P. Malm, E. Bengtsson and A. Mehnert. "Novel chromatin texture features for the classification of pap smears", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  6. I. Fondon, M.J.J.P. van Grinsven, C.I. Sanchez and A. Saez. "Perceptually adapted method for optic disc detection on retinal fundus images", in: Computer-Based Medical Systems (CBMS), 2013 IEEE 26th International Symposium on, 2013, pages 279-284. PDF DOI

  7. L. Gallardo-Estrella, B. van Ginneken and E.M. van Rikxoort. "Normalization of CT scans reconstructed with different kernels to reduce variability in emphysema measurements", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700E. Abstract/PDF DOI

  8. M. Ghafoorian, N. Taghizadeh and H. Beigy. "Automatic Abstraction in Reinforcement Learning Using Ant System Algorithm", in: AAAI Spring Symposium: Lifelong Machine Learning, 2013. Abstract

  9. B. van Ginneken, R.H.H.M. Philipsen, L. Hogeweg, P. Maduskar, J.C. Melendez, C.I. Sanchez, R. Maane, B. dei Alorse, U. d'Alessandro and I.M.O. Adetifa. "Automated Scoring of Chest Radiographs for Tuberculosis Prevalence Surveys: A Combined Approach", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 9-19. Abstract/PDF

  10. M.J.J.P. van Grinsven, A. Chakravarty, J. Sivaswamy, T. Theelen, B. van Ginneken and C.I. Sanchez. "A bag of words approach for discriminating between retinal images containing exudates or drusen", in: IEEE International Symposium on Biomedical Imaging, 2013, pages 1444-1447. Abstract/PDF DOI

  11. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, T. Theelen and C.I. Sanchez. "Automatic Age-related macular degeneration detection and staging", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700M. Abstract/PDF DOI

  12. A. Gubern-Merida, B. Platel, R. Marti and N. Karssemeijer. "Automated localization of malignant lesions in breast DCE-MRI", in: MICCAI Workshop: Breast Image Analysis, 2013. Abstract/PDF

  13. A. Gubern-Merida, L. Wang, M. Kallenberg, R. Marti, H. Hahn and N. Karssemeijer. "Breast segmentation in MRI: quantitative evaluation of three methods", in: Medical Imaging of Proceedings of the SPIE, 2013, pages 86693G-86693G-7. Abstract/PDF DOI

  14. H.O.A. Laue, M.T.H. Oei, L. Chen, I. Kompan, H.K. Hahn, M. Prokop and R. Manniesing. "Automated Artery and Vein Detection in Dynamic CT data with an Unsupervised Classification Algorithm of the Time Intensity Curves", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  15. P. Lo, E.M. van Rikxoort, F. Abtin, S. Ahmad, A. Ordookhani, J.G. Goldin and M.S. Brown. "Automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: Medical Imaging, volume 8869 of Proceedings of the SPIE, 2013, page 86693R. Abstract/PDF DOI

  16. P. Lo, E.M. van Rikxoort, J. Goldin and M.S. Brown. "Semi-automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013. Abstract/PDF

  17. P. Maduskar, L. Hogeweg, R. Philipsen and B. van Ginneken. "Automated localization of costophrenic recesses and costophrenic angle measurement on frontal chest radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 118, page 867038. Abstract/PDF DOI

  18. P. Maduskar, L. Hogeweg, R. Philipsen, S. Schalekamp and B. van Ginneken. "Improved texture analysis for automatic detection of Tuberculosis (TB) on Chest Radiographs with Bone Suppression images", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 16, page 86700H. Abstract/PDF DOI

  19. J.J. Mordang, M.T.H. Oei, R. van den Boom, E.J. Smit, M. Prokop, B. van Ginneken and R. Manniesing. "A Pattern Recognition Framework for Vessel Segmentation in 4D CT of the Brain", in: Medical Imaging of Proceedings of the SPIE, 2013, page 866919. Abstract/PDF DOI

  20. M. Peemen, A.A.A. Setio, B. Mesman and H. Corporaal. "Memory-centric accelerator design for Convolutional Neural Networks", in: Computer Design (ICCD), 2013 IEEE 31st International Conference on, 2013, pages 13-19. PDF DOI

  21. R. Philipsen, P. Maduskar, L. Hogeweg and B. van Ginneken. "Normalization of Chest Radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700G. Abstract/PDF DOI

  22. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, J. Grutters, R. Ramos and A. Campilho. "Learning Interstitial Lung Diseases CT Patterns from Reports Keywords", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 21-32. Abstract/PDF

  23. M.M. Riad, B. Platel, F.-E. de Leeuw and N. Karssemeijer. "Detection of white matter lesions in cerebral small vessel disease", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  24. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. "Impact of Bone Suppression Imaging on the Detection of Lung Nodules in Chest Radiographs: Analysis of Multiple Reading Sessions", in: Medical Imaging of Proceedings of the SPIE, 2013, page 86730Y. Abstract/PDF DOI

  25. J. Schwaab, Y. Diez, J. Marti, R. Marti, J. van Zelst, B. Platel, T. Tan, J. Gregori, S. Wirtz, J. Kramme and M. Günther. "Image Quality in automated breast ultrasound images: a preliminary study for the development of automated image quality assessment", in: MICCAI Workshop: Breast Image Analysis, 2013. PDF

  26. A.A.A. Setio, F. van der Sommen, S. Zinger, E.J. Schoon and P.H.N. de With. "Evaluation and Comparison of Textural Feature Representation for the Detection of Early Stage Cancer in Endoscopy", in: Proc. VISAPP, 2013, pages 238-243. Abstract/PDF

  27. A. Srikantha, M.T. Harz, G. Newstead, L. Wang, B. Platel, K. Hegenscheid, R.M. Mann, H.K. Hahn and H.-O. Peitgen. "Symmetry-based detection and diagnosis of DCIS in breast MRI", in: Medical Imaging of Proceedings of the SPIE, 2013, pages 86701E-86701E-8. Abstract/PDF DOI

  28. T. Tan, B. Eiben, B. Platel, J. Zelst, L. Han, T. Mertzanidou, S. Johnsen, J. Hipwell, R. Mann, D. Hawkes and N. Karssemeijer. "Registration of automated 3D breast ultrasound views", in: MICCAI Workshop: Breast Image Analysis, 2013. PDF

  29. T. Tan, B. Platel, M. Hicks, R.M. Mann and Nico Karssemeijer. "Finding Lesion Correspondences in Different Views of Automated 3D Breast Ultrasound", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  30. W.J.M. van de Ven, Y. Hu, J.O. Barentsz, N. Karssemeijer, D. Barratt and H.J. Huisman. "Surface-based prostate registration with biomechanical regularization", in: Medical Imaging, volume 8671 of Proceedings of the SPIE, 2013, page 86711R. Abstract/PDF DOI


Abstracts

  1. R. van den Boom, M. Oei, L. Oostveen, H. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of dose reduction on cerebral CT perfusion maps: results from a hybrid digital perfusion phantom", in: European Congress of Radiology, 2013. Abstract

  2. M. Brink, E.M. van Rikxoort, J. Charbonnier, S.J. van Riel, C.M. Schaefer-Prokop and M. Prokop. "Iodine Mapping of the Lung Using Subtraction Imaging for Pulmonary Embolism: Technique and Initial Clinical Experience", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  3. B. van Ginneken, E.M. van Rikxoort, S.J. Lafebre, C. Jacobs, M. Schmidt, J.-M. Kuhnigk, M. Prokop, C.M. Schaefer-Prokop, J. Charbonnier, L. Hogeweg, P. Maduskar, L. Gallardo-Estrella, R. Philipsen and B. Lassen. "CIRRUS Lung: an optimized workflow for quantitative image analysis of thoracic computed tomography and chest radiography for major pulmonary diseases: chronic obstructive pulmonary disease, lung cancer and tuberculosis", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  4. C. Jacobs, B. van Ginneken, S. Fromme, M. Prokop and E.M. van Rikxoort. "Benchmarking computer-aided detection of pulmonary nodules on the recently completed publicly available LIDC/IDRI database", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  5. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Automated characterization of pulmonary nodules in thoracic CT images using a segmentation-based classification system", in: European Congress of Radiology, 2013. Abstract

  6. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Non-solid, part-solid or solid? Classification of pulmonary nodules in thoracic CT by radiologists and a computer-aided diagnosis system", in: European Congress of Radiology, 2013. Abstract

  7. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Initial prospective evaluation of the prostate imaging reporting and data standard (PI-RADS): Can it reduce unnecessary MR guided biopsies?", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  8. M.C. Maas, M.J. Koopman, G.J. Litjens, A.J. Wright, K.M. Selnas, I.S. Gribbestad, M.A. Haider, K.J. Macura, D.J. Margolis, B. Kiefer, J.J. Fütterer and T.W. Scheenen. "Prostate Cancer localization with a Multiparametric MR Approach (PCaMAP): initial results of a multi-center study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2013. PDF

  9. P. Maduskar, L. Hogeweg, H. Ayles and B. van Ginneken. "Performance evaluation of automatic chest radiograph reading for detection of tuberculosis (TB): a comparative study with clinical officers and certified readers on TB suspects in sub-Saharan Africa", in: European Congress of Radiology, 2013. Abstract

  10. M.T.H. Oei, R. van den Boom, L.J. Oostveen, H.O.A. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Influence of Temporal Sampling Rate of CTP acquisitions on Cerebral Perfusion Maps using a Digital Phantom", in: European Congress of Radiology, 2013. Abstract

  11. S.J. van Riel, E.M. van Rikxoort, C. Jacobs, S. Schalekamp, M. Prokop, B. van Ginneken, P.A. de Jong, E.T. Scholten, H.A. Gietema and C.M. Schaefer-Prokop. "Intra- and inter-reader variability of pulmonary nodule classification according to the Fleischner guidelines: clinical consequences", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  12. S.J. van Riel, C.M. Schaefer-Prokop, E.M. van Rikxoort, B. van Ginneken, M. Prokop, S. Schalekamp, C. Jacobs, P.A. de Jong, H.A. Gietema and E.T. Scholten. "Impact of section thickness on classification of pulmonary nodules into solid, part-solid, and non-solid: an observer study", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  13. S. Schalekamp, B. van Ginneken, M. Brink, B. Heggelman, M. Spee, I. Somers, N. Karssemeijer and C. Schaefer-Prokop. ""Computer Aided Detection shows added value to Bone Suppression Imaging for the detection of lung nodules in chest radiographs"", in: WCTI, 2013. Abstract

  14. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. ""Computer aided detection of lung nodules in chest radiographs: novel approaches to improve reader performance"", in: MIPS, 2013. Abstract

  15. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. ""Independent combination of multiple readers for the detection of lung nodules in chest radiographs: setting a benchmark for computer-aided detection"", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  16. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J.-M. Kuhnigk, M. Oudkerk, H. de Koning and B. van Ginneken. "Reproducibility of automated three-dimensional airway wall thickness measurements in thoracic computed tomography and influence of inspiration depth", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  17. M.M. Teussink, M.J.J.P. van Grinsven, B. Cense, C.B. Hoyng, J. Klevering and T. Theelen. "Functional optical coherence tomography with a commercial device - a pilot study", in: Association for Research in Vision and Ophthalmology, 2013. Abstract

  18. W.J.M. van de Ven, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Image registration for prostate MR guided biopsy using automated biomechanical modeling", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  19. J. van Zelst, R. Mus, T. Tan, N. Karssemeijer and R. Mann. "Feasibility of automated 3D breast ultrasound scanning in screening of women with high risk", in: European Congress of Radiology, 2013. Abstract

  20. J. van Zelst, T. Tan, B. Platel, N. Karssemeijer and R. Mann. "Evaluation of spiculation and retraction patterns in coronal reconstructions in 3D Automated Breast Ultrasound (ABUS) improve differentiation between benign and malignant breast lesions", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract


Theses

  1. A. Firouzian. "Automated Analysis of Intracranial Aneurysm Morphology and Dynamics from CTA Data", PhD thesis, Erasmus University Rotterdam, 2013. Abstract/PDF URL

  2. L.E. Hogeweg. "Automatic detection of tuberculosis in chest radiographs", PhD thesis, Radboud University, Nijmegen, 2013. Abstract/PDF URL


Other publications

  1. R. Beichel, M. de Bruijne, S. Kabus, A.P. Kiraly, J.M. Kuhnigk, J. McClelland, T. Kitasaka, E.M. van Rikxoort and S. Rit. "The Fifth International Workshop on Pulmonary Image Analysis", 2013. Abstract/PDF URL


2012

Papers in international journals

  1. M. Alberti, S. Balocco, C. Gatta, F. Ciompi, O. Pujol, J. Silva, X. Carrillo and P. Radeva. "Automatic bifurcation detection in coronary IVUS sequences", IEEE Transactions on Biomedical Engineering 2012;59(4):1022-1031. Abstract/PDF DOI PMID 22231146

  2. A.M.J. Bluekens, R. Holland, N. Karssemeijer, M.J.M. Broeders and G.J. den Heeten. "Comparison of Digital Screening Mammography and Screen-Film Mammography in the Early Detection of Clinically Relevant Cancers: A Multicenter Study", Radiology 2012;265:707-714. Abstract/PDF DOI PMID 23033499

  3. P.M. Boiselle, L.R. Goodman, D. Litmanovich, M. Remy-Jardin and C. Schaefer-Prokop. "Expert opinion: CT pulmonary angiography in pregnant patients with suspected pulmonary embolism", Journal of Thoracic Imaging 2012;27(1):5. PDF DOI PMID 22189243

  4. E.J.L. Brunenberg, P. Moeskops, W.H. Backes, C. Pollo, L. Cammoun, A. Vilanova, M.L.F. Janssen, V.E.R.M. Visser-Vandewalle, B.M. Ter Haar Romeny, J.-P. Thiran and B. Platel. "Structural and Resting State Functional Connectivity of the Subthalamic Nucleus: Identification of Motor STN Parts and the Hyperdirect Pathway", PLoS One 2012;7(6):e39061. Abstract/PDF DOI PMID 22768059

  5. D. Chong, M.S. Brown, H.J. Kim, E.M. van Rikxoort, L. Guzman, M.F. McNitt-Gray, M. Khatonabadi, M. Galperin-Aizenberg, K. Yang, Y. Jung and J.G. Goldin. "Reproducibility of volume and densitometric measures of emphysema on repeat computed tomography with an interval of 1 week", European Radiology 2012:287-294. Abstract/PDF DOI PMID 22011903

  6. F. Ciompi, O. Pujol, C. Gatta, M. Alberti, S. Balocco, X. Carrillo, J. Mauri-Ferre and P. Radeva. "HoliMAb: A holistic approach for Media--Adventitia border detection in intravascular ultrasound", Medical Image Analysis 2012. Abstract/PDF URL PMID 22854037

  7. D.W. De Boo, F. van Hoorn, J. van Schuppen, L. Schijf, M.J. Scheerder, N.J. Freling, O. Mets, M. Weber and C.M. Schaefer-Prokop. "Observer training for computer-aided detection of pulmonary nodules in chest radiography", European Radiology 2012;22(8):1659-1664. Abstract/PDF DOI PMID 22447377

  8. E. Eisenhuber, C.M. Schaefer-Prokop, H. Prosch and W. Schima. "Bedside chest radiography", Respiratory Care 2012;57(3):427-443. Abstract/PDF DOI PMID 22391269

  9. A.S. Fortuin, W.M.L.L.G. Deserno, H.J.M. Meijer, G.J. Jager, S. Takahashi, O.A. Debats, S.N. Reske, C. Schick, B.J. Krause, I. van Oort, A.J. Witjes, Y.L. Hoogeveen, E.N.J. Th van Lin and J.O. Barentsz. "Value of PET/CT and MR Lymphography in Treatment of Prostate Cancer Patients with Lymph Node Metastases", International Journal of Radiation Oncology, Biology, Physics 2012;84:712-718. Abstract/PDF DOI PMID 22417806

  10. T. Hambrock, C. Hoeks, C. Hulsbergen-van de Kaa, T. Scheenen, J. Fütterer, S. Bouwense, I. van Oort, F. Schröder, H. Huisman and J. Barentsz. "Prospective Assessment of Prostate Cancer Aggressiveness Using 3-T Diffusion-Weighted Magnetic Resonance Imaging-Guided Biopsies Versus a Systematic 10-Core Transrectal Ultrasound Prostate Biopsy Cohort", European Urology 2012;61(1):177-184. Abstract/PDF DOI PMID 21924545

  11. L. Hogeweg, C.I. Sanchez, P.A. de Jong, P. Maduskar and B. van Ginneken. "Clavicle segmentation in chest radiographs", Medical Image Analysis 2012;16(8):1490 - 1502. Abstract/PDF DOI PMID 22998970

  12. B. de Hoop, B. van Ginneken, H. Gietema and M. Prokop. "Pulmonary Perifissural Nodules on CT Scans: Rapid Growth Is Not a Predictor of Malignancy", Radiology 2012;265(2):611-616. Abstract/PDF DOI PMID 22929331

  13. I. Išgum, M. Prokop, M. Niemeijer, M. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose chest computed tomography", IEEE Transactions on Medical Imaging 2012;31:2322 - 2334. Abstract/PDF DOI PMID 22961297

  14. P.C. Jacobs, M.J.A. Gondrie, Y. van der Graaf, H.J. de Koning, I. Išgum, B. van Ginneken and W.P.T.M. Mali. "Coronary Artery Calcium Can Predict All-Cause Mortality and Cardiovascular Events on Low-Dose CT Screening for Lung Cancer", American Journal of Roentgenology 2012;198(3):505-511. Abstract/PDF DOI PMID 22357989

  15. M. Kallenberg, C. van Gils, M. Lokate, G. den Heeten and N. Karssemeijer. "Effect of compression paddle tilt correction on volumetric breast density estimation", Physics in Medicine and Biology 2012;57(16):5155-5168. Abstract/PDF DOI PMID 22842727

  16. M.G.J. Kallenberg and N. Karssemeijer. "Compression paddle tilt correction in full-field digital mammograms", Physics in Medicine and Biology 2012;57(3):703-715. Abstract/PDF DOI PMID 22241616

  17. T. Kobus, P.C. Vos, T. Hambrock, M. De Rooij, C.A. Hulsbergen-Van de Kaa, J.O. Barentsz, A. Heerschap and T.W.J. Scheenen. "Prostate Cancer Aggressiveness: In Vivo Assessment of MR Spectroscopy and Diffusion-weighted Imaging at 3 T", Radiology 2012;265:457-467. Abstract/PDF DOI PMID 22843767

  18. M.O. Leach, B. Morgan, P.S. Tofts, D.L. Buckley, W. Huang, M.A. Horsfield, T.L. Chenevert, D.J. Collins, A. Jackson, D. Lomas, B. Whitcher, L. Clarke, R. Plummer, I. Judson, R. Jones, R. Alonzi, T. Brunner, D.M. Koh, P. Murphy, J.C. Waterton, G. Parker, M.J. Graves, T.W.J. Scheenen, T.W. Redpath, M. Orton, G. Karczmar, H. Huisman, J. Barentsz, A. Padhani and o. b. o. t.E.C.M.C.I.N.S.C. . "Imaging vascular function for early stage clinical trials using dynamic contrast-enhanced magnetic resonance imaging", European Radiology 2012;22(7):1451-1464. Abstract/PDF URL PMID 22562143

  19. J.M. Lesniak, R. Hupse, R. Blanc, N. Karssemeijer and G. Szekely. "Comparative evaluation of support vector machine classification for computer aided detection of breast masses in mammography", Physics in Medicine and Biology 2012;57(16):5295-5307. Abstract/PDF DOI PMID 22853938

  20. G. Litjens, T. Hambrock, C. Hulsbergen-van de Kaa, J. Barentsz and H. Huisman. "Interpatient Variation in Normal Peripheral Zone Apparent Diffusion Coefficient: Effect on the Prediction of Prostate Cancer Aggressiveness", Radiology 2012;265(1):260-266. Abstract/PDF DOI PMID 22923722

  21. P. Lo, B. van Ginneken, J.M. Reinhardt, Y. Tarunashree, P.A. de Jong, B. Irving, C. Fetita, M. Ortner, R. Pinho, J. Sijbers, M. Feuerstein, A. Fabijanska, C. Bauer, R. Beichel, C.S. Mendoza, R. Wiemker, J. Lee, A.P. Reeves, S. Born, O. Weinheimer, E.M. van Rikxoort, J. Tschirren, K. Mori, B. Odry, D.P. Naidich, I.J. Hartmann, E.A. Hoffman, M. Prokop, J.H. Pedersen and M. de Bruijne. "Extraction of Airways from CT (EXACT'09)", IEEE Transactions on Medical Imaging 2012;31(11):2093-2107. Abstract/PDF DOI PMID 22855226

  22. H.J.M. Meijer, O.A. Debats, M. Kunze-Busch, P. van Kollenburg, J.W. Leer, J.A. Witjes, J.H.A.M. Kaanders, J.O. Barentsz and E.N.J.T. van Lin. "Magnetic Resonance Lymphography-Guided Selective High-Dose Lymph Node Irradiation in Prostate Cancer", International Journal of Radiation Oncology, Biology, Physics 2012;82(1):175-183. Abstract/PDF DOI PMID 21075555

  23. H.J.M. Meijer, O.A. Debats, M. Roach, 3rd, P.N. Span, J.A. Witjes, J.H.A.M. Kaanders, E.N.J.T. van Lin and J.O. Barentsz. "Magnetic Resonance Lymphography Findings in Patients With Biochemical Recurrence After Prostatectomy and the Relation With the Stephenson Nomogram", International Journal of Radiation Oncology, Biology, Physics 2012;84(5):1186-1191. Abstract/PDF DOI PMID 22520482

  24. H.J.M. Meijer, E.N. van Lin, O.A. Debats, J.A. Witjes, P.N. Span, J.H.A.M. Kaanders and J.O. Barentsz. "High Occurrence of Aberrant Lymph Node Spread on Magnetic Resonance Lymphography in Prostate Cancer Patients with a Biochemical Recurrence After Radical Prostatectomy", International Journal of Radiation Oncology, Biology, Physics 2012;82 (4):1405-1410. Abstract/PDF DOI PMID 21640507

  25. A.M. Mendrik, E.P.A. Vonken, G.A.P. de Kort, B. van Ginneken, E.J. Smit, M.A. Viergever and M. Prokop. "Improved Arterial Visualization in Cerebral CT Perfusion-Derived Arteriograms Compared with Standard CT Angiography: A Visual Assessment Study", American Journal of Neuroradiology 2012;33(11):2171-2177. Abstract/PDF DOI PMID 22627803

  26. T. Mertzanidou, J. Hipwell, M.J. Cardoso, X. Zhang, C. Tanner, S. Ourselin, U. Bick, H. Huisman, N. Karssemeijer and D. Hawkes. "MRI to X-ray mammography registration using a volume-preserving affine transformation", Medical Image Analysis 2012;16(5):966-975. Abstract/PDF DOI PMID 22513136

  27. O.M. Mets, R.A. van Hulst, C. Jacobs, B. van Ginneken and P.A. de Jong. "Normal Range of Emphysema and Air Trapping on CT in Young Men", American Journal of Roentgenology 2012;199(2):336-340. Abstract/PDF DOI PMID 22826394

  28. O.M. Mets, P.A. de Jong, B. van Ginneken, H.A. Gietema and J.W.J. Lammers. "Quantitative Computed Tomography in COPD: Possibilities and Limitations", Lung 2012;190:133-145. Abstract/PDF DOI PMID 22179694

  29. O.M. Mets, K. Murphy, P. Zanen, H.A. Gietema, J.W. Lammers, B. van Ginneken, M. Prokop and P.A. de Jong. "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology 2012;22(1):120-128. Abstract/PDF DOI PMID 21837396

  30. O.M. Mets, P. Zanen, J.-W.J. Lammers, I. Išgum, H.A. Gietema, B. van Ginneken, M. Prokop and P.A. de Jong. "Early Identification of Small Airways Disease on Lung Cancer Screening CT: Comparison of Current Air Trapping Measures", Lung 2012;190:629-633. Abstract/PDF DOI PMID 23064488

  31. F.A.A. Mohamed Hoesein, E.M. van Rikxoort, B. van Ginneken, P.A. de Jong, M. Prokop, J.-W.J. Lammers and P. Zanen. "CT-quantified emphysema distribution is associated with lung function decline", European Respiratory Journal 2012;40(4):844-850. Abstract/PDF DOI PMID 22323577

  32. F.A.A. Mohamed Hoesein, P. Zanen, H.M. Boezen, H.J.M. Groen, B. van Ginneken, P.A. de Jong, D.S. Postma and J.-W.J. Lammers. "Lung function decline in heavy male smokers relates to baseline airflow obstruction severity", Chest 2012;142(6):1530-1538. Abstract/PDF DOI PMID 22722231

  33. S.E.A. Muenzing, B. van Ginneken, K. Murphy and J.P.W. Pluim. "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis 2012;16:1521-1531. Abstract/PDF DOI PMID 22981428

  34. K. Murphy, J.P.W. Pluim, E.M. van Rikxoort, P.A. de Jong, B. de Hoop, H.A. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken. "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics 2012;39(3):1650-1662. Abstract/PDF DOI PMID 22380397

  35. E.M. van Rikxoort, J. Goldin, F. Abtin, H.J. Kim, P. Lu, B. van Ginneken, G. Shaw, M. Galperin-Aizenberg and M.S. Brown. "A method for the automatic quantification of the completeness of pulmonary fissures: evaluation in a database of subjects with severe emphysema", European Radiology 2012;22(2):302-309. Abstract/PDF DOI PMID 21984417

  36. T. Roelofsen, L.C.L.T. van Kempen, J.A.W.M. van der Laak, M.A. van Ham, J. Bulten and L.F.A.G. Massuger. "Concurrent Endometrial Intraepithelial Carcinoma (EIC) and Serous Ovarian Cancer. Can EIC Be Seen as the Precursor Lesion?", International Journal of Gynaecological Cancer 2012;22(3):457-464. Abstract/PDF DOI

  37. C.I. Sanchez, M. Niemeijer, I. Išgum, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Contextual computer-aided detection: Improving bright lesion detection in retinal images and coronary calcification identification in CT scans", Medical Image Analysis 2012;16(1):50-62. Abstract/PDF DOI PMID 21689964

  38. M.G. Schouten, J.G.R. Bomers, D. Yakar, H. Huisman, E. Rothgang, D. Bosboom, T.W.J. Scheenen, S. Misra and J.J. Fütterer. "Evaluation of a robotic technique for transrectal MRI-guided prostate biopsies", European Radiology 2012;22:476-483. Abstract/PDF DOI PMID 21956697

  39. E.J. Smit, E.-J. Vonken, I.C. van der Schaaf, A. Mendrik, J.W. Dankbaar, A.D. Horsch, T. van Seeters, B. van Ginneken and M. Prokop. "Timing-Invariant Reconstruction for Deriving High-quality CT Angiographic Data from Cerebral CT Perfusion Data", Radiology 2012;263:216-225. Abstract/PDF DOI PMID 22332063

  40. M.J. Stoutjesdijk, M. Zijp, C. Boetes, N. Karssemeijer, J.O. Barentsz and H. Huisman. "Computer aided analysis of breast MRI enhancement kinetics using mean shift c lustering and multifeature iterative region of interest selection", Journal of Magnetic Resonance Imaging 2012;36:1104-1112. Abstract/PDF DOI PMID 22786883

  41. T. Tan, B. Platel, H. Huisman, C.I. Sanchez, R. Mus and N. Karssemeijer. "Computer Aided Lesion Diagnosis in Automated 3D Breast Ultrasound Using Coronal Spiculation", IEEE Transactions on Medical Imaging 2012;31(5):1034-1042. Abstract/PDF DOI PMID 22271831

  42. M. Velikova, P.J.F. Lucas, M. Samulski and N. Karssemeijer. "A probabilistic framework for image information fusion with an application to mammographic analysis", Medical Image Analysis 2012;16:865-875. Abstract/PDF DOI PMID 22326491

  43. R. Visser, W.J.H. Veldkamp, D. Beijerinck, P.A.M. Bun, J.J.M. Deurenberg, M.W. Imhof-Tas, K.H. Schuur, M.M. Snoeren, G.J. den Heeten, N. Karssemeijer and M.J.M. Broeders. "Increase in perceived case suspiciousness due to local contrast optimisation in digital screening mammography", European Radiology 2012;22(4):908-914. Abstract/PDF DOI PMID 22071778

  44. P.C. Vos, J.O. Barentsz, N. Karssemeijer and H.J. Huisman. "Automatic computer-aided detection of prostate cancer based on multiparametric magnetic resonance image analysis", Physics in Medicine and Biology 2012;57(6):1527-1542. Abstract/PDF DOI PMID 22391091

  45. D. Vukadinovic, S. Rozie, M. van Gils, T. van Walsum, R. Manniesing, A. van der Lugt and W.J. Niessen. "Automated versus manual segmentation of atherosclerotic carotid plaque volume and components in CTA: associations with cardiovascular risk factors", International Journal of Cardiovascular Imaging 2012;28:877-887. Abstract/PDF DOI PMID 21614484

  46. R. Wittenberg, F.H. Berger, J.F. Peters, M. Weber, F. van Hoorn, L.F.M. Beenen, M.M.A.C. van Doorn, J. van Schuppen, I.A.J. Zijlstra, M. Prokop and C.M. Schaefer-Prokop. "Acute pulmonary embolism: effect of a computer-assisted detection prototype on diagnosis--an observer study", Radiology 2012;262(1):305-313. Abstract/PDF DOI PMID 22190659

  47. R. Wittenberg, J.F. Peters, M. Weber, R.J. Lely, L.P.J. Cobben, M. Prokop and C.M. Schaefer-Prokop. "Stand-alone performance of a computer-assisted detection prototype for detection of acute pulmonary embolism: a multi-institutional comparison", British Journal of Radiology 2012;85(1014):758-764. Abstract/PDF DOI PMID 22167514

  48. R. Wittenberg, J.W. van Vliet, B. Ghaye, J.F. Peters, C.M. Schaefer-Prokop and E. Coche. "Comparison of automated 4-chamber cardiac views versus axial views for measuring right ventricular enlargement in patients with suspected pulmonary embolism", European Journal of Radiology 2012;81(2):218-222. Abstract/PDF DOI PMID 21315530

  49. D. Yakar, O.A. Debats, J.G.R. Bomers, M.G. Schouten, P.C. Vos, E. van Lin, J.J. Fütterer and J.O. Barentsz. "Predictive value of MRI in the localization, staging, volume estimation, assessment of aggressiveness, and guidance of radiotherapy and biopsies in prostate cancer", Journal of Magnetic Resonance Imaging 2012;35(1):20-31. Abstract/PDF DOI PMID 22174000


Papers in conference proceedings

  1. R. van den Boom, M. Oei, S. Lafebre, L. Oostveen, A. Meijer, S. Steens, M. Prokop, B. van Ginneken and R. Manniesing. "Brain Tissue Segmentation in 4D CT Images Using Voxel Classification", in: Medical Imaging, volume 8314 of Proceedings of the SPIE, 2012, pages 83144B-83144B-6. Abstract/PDF DOI

  2. J. Bozek, M.G.J. Kallenberg, M. Grgic and N. Karssemeijer. "Comparison of Lesion Size Using Area and Volume in Full Field Digital Mammograms", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 96-103. Abstract/PDF DOI

  3. A. Firouzian, R. Manniesing, C. Metz, S. Klein, B.K. Velthuis, G. Rinkel, A. van der Lugt and W. Niessen. "Intracranial aneurysm growth quantification on CTA", in: Medical Imaging, volume 8314 of Proceedings of the SPIE, 2012, pages 831448-1-83148-9. Abstract/PDF DOI

  4. A. Gubern-Merida, M. Kallenberg, R. Marti and N. Karssemeijer. "Segmentation of the pectoral muscle in breast MRI using atlas-based approaches", in: Medical Image Computing and Computer-Assisted Intervention, volume 15 of Lecture Notes in Computer Science, 2012, page Pt 2, pages 371-378. Abstract/PDF DOI PMID 23286070

  5. T.T.J.P. Kockelkorn, R. Ramos, J. Ramos, C.I. Sanchez, P.A. de Jong, C. Schaefer-Prokop, J.C. Grutters, B. van Ginneken and M.A. Viergever. "Interactive classification of lung tissue in CT scans by combining prior and interactively obtained training data: a simulation study", in: International Conference on Pattern Recognition, 2012, pages 105-108. Abstract/PDF

  6. M. Koek, F.B. Goncalves, D. Poldermans, W. Niessen and R. Manniesing. "Semi-Automated Subcutaneous and Visceral Adipose Tissue Quantification in Computed Tomography", in: MICCAI Workshop on Computational and Clinical Applications in Abdominal Imaging, volume 7029 of Lecture Notes in Computer Science, 2012, pages 215-222. Abstract/PDF DOI

  7. J.M. Lesniak, G. van Schie, C. Tanner, B. Platel, H. Huisman, N. Karssemeijer and G. Szekely. "Multimodal Classification of Breast Masses in Mammography and MRI using Unimodal Feature Selection and Decision Fusion", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 88-95. Abstract/PDF DOI

  8. G. Litjens, J. Barentsz, N. Karssemeijer and H. Huisman. "Automated computer-aided detection of prostate cancer in MR images: from a whole-organ to a zone-based approach", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, page 1, pages 83150G-83150G-6. Abstract/PDF DOI

  9. G. Litjens, O.A. Debats, W.J.M. van de Ven, N. Karssemeijer and H.J. Huisman. "A pattern recognition approach to zonal segmentation of the prostate on MRI", in: Medical Image Computing and Computer-Assisted Intervention, volume 7511 of Lecture Notes in Computer Science, 2012, pages 413-420. Abstract/PDF DOI

  10. G. Litjens, N. Karssemeijer and H.J. Huisman. "A multi-atlas approach for prostate segmentation in MRI", in: MICCAI Workshop: Prostate Cancer Imaging: The PROMISE12 Prostate Segmentation Challenge, 2012. PDF

  11. J. Melendez, C.I. Sanchez, R. Hupse, B. van Ginneken and N. Karssemeijer. "Potential of a Standalone Computer-Aided Detection System for Breast Cancer Detection in Screening Mammography", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 682-689. Abstract/PDF DOI

  12. R. Moshavegh, B. Ehteshami Bejnordi, A. Mehnert, K. Sujathan, P. Malm and E. Bengtsson. "Automated segmentation of free-lying cell nuclei in Pap smears for malignancy-associated change analysis", in: Engineering in Medicine and Biology Society (EMBC), 2012. Abstract/PDF DOI

  13. S. Muenzing, B. van Ginneken and J.P.W. Pluim. "DIRBoost: An algorithm for boosting deformable image registration", in: IEEE International Symposium on Biomedical Imaging, 2012, pages 1339-1342. Abstract/PDF DOI

  14. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "On Combining Algorithms for Deformable Image Registration", in: Biomedical Image Registration of Lecture Notes in Computer Science, 2012, pages 256-265. Abstract/PDF DOI

  15. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, R. Ramos and A. Campilho. "Supervised Content Based Image Retrieval Using Radiology Reports", in: Image Analysis and Recognition, volume 7325 of Lecture Notes in Computer Science, 2012, pages 249-258. Abstract/PDF DOI

  16. E.M. van Rikxoort, P.A. de Jong, O.M. Mets and B. van Ginneken. "Automatic classication of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 83150P-83150P-6. Abstract/PDF DOI

  17. T. Tan, B. Platel, R. Mus and N. Karssemeijer. "Detection of Breast Cancer in Automated 3D Breast Ultrasound", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 831505-1-831505-8. Abstract/PDF DOI

  18. C. Tromans, G. van Schie, N. Karssemeijer and M. Brady. "A Hypothesis-Test Framework for Quantitative Lesion Detection and Diagnosis", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 458-465. Abstract/PDF DOI


Abstracts

  1. R. van den Boom, M. Oei, L. Oostveen, S. Lafebre, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of radiation exposure on quantitative evaluation of cerebral CT perfusion maps: results from a hybrid digital phantom", in: European Congress of Radiology, 2012. Abstract

  2. B. Durmus, R. Gaillard, R. Manniesing, D. Heppe, A. Hofman and V. Jaddoe. "Maternal Smoking During Pregnancy and Adiposity in School Age Children: The Generation R Study", in: International Society for Development Origins of Health and Disease, 2012. Abstract

  3. L. Gallardo-Estrella, B. van Ginneken, O.M. Mets, P. Zanen, P.A. de Jong, C.M. Schaefer-Prokop and E.M. van Rikxoort. "Trachea Shape Analysis from Inspiration and Expiration Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  4. L. Gallardo-Estrella, P.A. de Jong, O.M. Mets, B. van Ginneken and E.M. van Rikxoort. "Automatic classification of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  5. B. van Ginneken, L. Hogeweg, P. Maduskar, L. Peters-Bax, R. Dawson, K. Dheda, H. Ayles, J. Melendez and C.I. Sanchez. "Performance of inexperienced and experienced observers in detection of active tuberculosis on digital chest radiographs with and without the use of computer-aided diagnosis", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  6. M.J.J.P. van Grinsven, B. van Ginneken and C.I. Sanchez. "Web-based workstation for the analysis of color fundus images", in: ISBI Medical Image Analysis Workshop, 2012. Abstract

  7. M.J.J.P. van Grinsven, J.P.H. van de Ven, Y.T.E. Lechanteur, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sanchez. "Automatic Drusen Detection and Quantification for Diagnosis of Age-Related Macular Degeneration", in: Association for Research in Vision and Ophthalmology, 2012. Abstract

  8. C. Jacobs, J. Kuhnigk, E.M. van Rikxoort, T. Twellmann, P. de Jong, H. Gietema, B. Lassen, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Optimized workflow for low dose thoracic CT lung cancer screening: automated detection, measurement, temporal matching and volumetry and mass analysis, individualized prediction of cancer risk, structured reporting with follow-up recommendation", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  9. C. Jacobs, E.M. van Rikxoort, T. Twellmann, P. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Improved computer-aided detection of pulmonary nodules by combining a solid and subsolid nodule CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  10. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Lung Cancer Screening: Retrospective Evaluation of Potential Benefit", in: European Congress of Radiology, 2012. Abstract

  11. M. Kallenberg, C. van Gils, R.M. Mann and N. Karssemeijer. "Association between automated, volumetric measures of breast density and diagnostic outcome of mammography screening examinations", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  12. B. Lassen, E.M. van Rikxoort, J. Kuhnigk and B. van Ginneken. "Fast and Intuitive Interactive Lung Lobe Segmentation in Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  13. B.C. Lassen, M. Schmidt, E.M. van Rikxoort, B. van Ginneken, C. Jacobs, J. Kuhnigk and M. Prokop. "Automated and interactive image analysis workstation for the extraction of imaging biomarkers related to chronic obstructive pulmonary disease from thoracic computed tomography scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  14. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Computerized characterization of central gland lesions using texture and relaxation features from T2-weighted prostate MRI", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  15. R. Mann, R. Mus, C. Geppert, C. Frentz, N. Karssemeijer, H. Huisman and B. Platel. "Initial maximum slope of the contrast enhancement versus time curve for dynamic evaluation of breast lesions on ultrafast breast MRIs", in: European Congress of Radiology, 2012. Abstract URL

  16. R. Mann, R. Mus, C. Geppert, C. Frentz, N. Karssemeijer, H. Huisman and B. Platel. "Dynamic analysis of breast lesions: Can we use the wash-in phase instead of the wash-out phase?", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2012. PDF

  17. J. Melendez, C.I. Sanchez, B. van Ginneken and N. Karssemeijer. "Detection of breast carcinomas potentially missed during screening by means of a standalone CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  18. J.J. Mordang, M.T.H. Oei, R. van den Boom, H.O.A. Laue, L.J. Oostveen, M. Prokop, B. van Ginneken and R. Manniesing. "Effect of Dose Reduction in CT Perfusion Scans on Cerebral Blood Flow and Volume Computed with Three Perfusion Software Packages: Analysis with a Digital Phantom", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  19. R. Mus, R. Mann, A. Moyakine, C. Geppert, B. Platel, N. Karssemeijer and J. Barentsz. "MRI Screening of the Breast in Less than 2 Minutes: A Prelude to Extend MR Breast Screening Possibilities", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  20. A. Nair, Desai, S. R, C.S.J., A.J. Edey, S.L.F. Walsh, G. Robinson, J.K. Field, D.R. Baldwin, R. Vliegenthart, M. Oudkerk, B. van Ginneken, P.A. de Jong, M. Prokop, D.M. Hansell and A. Devaraj. "The impact of numbers of readers and methods of arbitration on pulmonary nodule detection in the context of lung cancer screening with CT", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  21. M.T.H. Oei, R. van den Boom, L.J. Oostveen, S. Lafebre, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Hybrid digital phantom for optimizing data acquisition strategies in CT perfusion", in: European Congress of Radiology, 2012. Abstract

  22. B. Platel, T. Welte, R. Mus, R. Mann, C.I. Sanchez, H. Hahn and N. Karssemeijer. "Automated Evaluation of an Ultrafast MR Imaging Protocol for the Characterization of Breast Lesions", in: Annual Meeting of the Radiological Society of North America, 2012. PDF

  23. E.M. van Rikxoort, B. van Ginneken, M. Schmidt, A. Lahaije, H. van Helvoort, M. Prokop and Y. Heijdra. "Dynamic Hyperinflation in COPD Patients: Is It Related to Emphysema and Airway Morphology in Inspiration and Expiration Thoracic CT?", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  24. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  25. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Botsuppressie in thoraxfoto's verbetert de detectie van pulmonale nodules door radiologen", in: Radiologen Dagen, 2012. Abstract

  26. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, M. Snoeren, L. Quekel, E. Koedam, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  27. S. Schalekamp, B. van Ginneken, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Computer aided detection helps radiologists to detect pulmonary nodules in chest radiographs, when having bone suppressed images available", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  28. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J. Kuhnigk and B. van Ginneken. "Automatic Quantification of Airway Dimensions in COPD: Processing Large Databases of Chest CT scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  29. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, P. Zanen, J. Kuhnigk and B. van Ginneken. "Relating Automatic Quantification of Airway Wall Thickness, Emphysema and Air Trapping in Inspiration and Expiration Chest CT Scans to COPD GOLD Stages", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  30. E.J. Smit, E. Vonken, F.J. Meijer, J. Dankbaar, A. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Acute Ischemic Stroke Assessment on CT-Angiography That Derived from CT-Perfusion Images", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  31. E. Vos, G. Litjens, T. Kobus, T. Hambrock, C. Hulsbergen van de Kaa, H. Huisman and T. Scheenen. "Dynamic contrast enhanced MR imaging for the assessment of prostate cancer aggressiveness at 3T", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2012. PDF

  32. L. Wang, B. Platel, T. Ivanovskaya, M. Harz and H. Hahn. "Fully automatic breast segmentation in 3D breast MRI", in: IEEE International Symposium on Biomedical Imaging, 2012. Abstract/PDF


Theses

  1. D.W. de Boo. "Advances in digital chest radiography: impact on reader performance", PhD thesis, University of Amsterdam, 2012. Abstract/PDF URL

  2. R. Brecheisen. "Visualization of uncertainty in fiber tracking based on diffusion tensor imaging", PhD thesis, Eindhoven University of Technology, 2012. Abstract/PDF URL

  3. F. Ciompi. "Multi-Class Learning for Vessel Characterization in Intravascular Ultrasound", PhD thesis, University of Barcelona, Spain, 2012. Abstract/PDF URL

  4. R. Hupse. "Detection of malignant masses in breast cancer screening by computer assisted decision making", PhD thesis, Radboud University, Nijmegen, 2012. Abstract/PDF URL

  5. M. Kallenberg. "Quantitative Analysis of Breast Images", PhD thesis, Radboud University, Nijmegen, 2012. Abstract/PDF URL

  6. R. Wittenberg. "Computer-Assisted Detection of Acute Pulmonary Embolism", PhD thesis, Utrecht University, 2012. Abstract/PDF URL


2011

Papers in international journals

  1. M.E.A.P.M. Adriaensen, H.H.H. Feringa, C.M. Schaefer-Prokop, S.A.P. Cornelissen, B.A. Zonnenberg and M. Prokop. "Focal fatty areas in the myocardium of patients with tuberous sclerosis complex: a unique finding", Journal of Thoracic Imaging 2011;26(1):W12-W13. Abstract/PDF DOI PMID 20921911

  2. M.E.A.P.M. Adriaensen, M.F.M. van Oosterhout, H.H.H. Feringa, C.M. Schaefer-Prokop, B.A. Zonnenberg and M. Prokop. "Mature fat cells in the myocardium of patients with tuberous sclerosis complex", Journal of Clinical Pathology 2011;64(3):244-245. Abstract/PDF DOI PMID 21217088

  3. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Radiological evidence of lymphangioleiomyomatosis in female and male patients with tuberous sclerosis complex", Clinical Radiology 2011;66(7):625-628. Abstract/PDF DOI PMID 21459371

  4. D.W. de Boo, M. Uffmann, S. Bipat, E.F.A. Boorsma, M.J. Scheerder, M. Weber and C.M. Schaefer-Prokop. "Gray-Scale Reversal for the Detection of Pulmonary Nodules on a PACS Workstation", American Journal of Roentgenology 2011;197(5):1096-1100. Abstract/PDF DOI PMID 22021501

  5. D.W. de Boo, M. Uffmann, M. Weber, S. Bipat, E.F. Boorsma, M.J. Scheerder, N.J. Freling and C.M. Schaefer-Prokop. "Computer-aided Detection of Small Pulmonary Nodules in Chest Radiographs An Observer Study", Academic Radiology 2011;18(12):1507-1514. Abstract/PDF DOI PMID 21963532

  6. D.W. de Boo, M. Weber, E.E. Deurloo, G.J. Streekstra, N.J. Freling, D.A. Dongelmans and C.M. Schaefer-Prokop. "Computed radiography versus mobile direct radiography for bedside chest radiographs: impact of dose on image quality and reader agreement", Clinical Radiology 2011;66(9):826-832. Abstract/PDF DOI PMID 21570679

  7. S. Brandt, G. Karemore, N. Karssemeijer and M. Nielsen. "An Anatomically Oriented Breast Coordinate System for Mammogram Analysis", IEEE Transactions on Medical Imaging 2011;30(10):1841-1851. Abstract/PDF DOI PMID 21609879

  8. E.J.L. Brunenberg, B. Platel, P.A.M. Hofman, B. ter Haar Romeny and V. Visser-Vandewalle. "Magnetic resonance imaging techniques for visualization of the subthalamic nucleus", Journal of Neurosurgery 2011;115:971-984. Abstract/PDF DOI PMID 21800960

  9. X. Carrillo, E. Fernandez-Nofrerias, F. Ciompi, O. Rodriguez-Leor, P. Radeva, N. Salvatella, O. Pujol, J. Mauri and A. Bayes-Genis. "Changes in radial artery volume assessed using intravascular ultrasound: a comparison of two vasodilator regimens in transradial coronary interventions", Journal of Invasive Cardiology 2011;23(10):401-404. Abstract/PDF URL PMID 21972156

  10. O.A. Debats, G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Automated 3-Dimensional Segmentation of Pelvic Lymph Nodes in Magnetic Resonance Images", Medical Physics 2011;38(11):6178-6187. Abstract/PDF DOI PMID 22047383

  11. W.M.L.L.G. Deserno, O.A. Debats, T. Rozema, A.S. Fortuin, R.A.M. Heesakkers, Y. Hoogeveen, P.G.M. Peer, J.O. Barentsz and E.N.J.T. van Lin. "Comparison of Nodal Risk Formula and MR Lymphography for Predicting Lymph Node Involvement in Prostate Cancer", International Journal of Radiation Oncology, Biology, Physics 2011;81(1):8-15. Abstract/PDF DOI PMID 20800390

  12. J.A.A.M. van Dijck, J.D.M. Otten, N. Karssemeijer, P. Kenemans, A.L.M. Verbeek and M.J. van der Mooren. "Less mammographic density after nasal versus oral administration of postmenopausal hormone therapy", Climacteric 2011;14(6):683-688. Abstract/PDF DOI PMID 21942620

  13. A. Firouzian, R. Manniesing, H.Z. Flach, R. Risselada, F. van Kooten, M. Sturkenboom, A. van der Lugt and W. Niessen. "Intracranial Aneurysm Segmentation in 3D CT Angiography: Method and Quantitative Validation with and without Prior Noise Filtering", European Journal of Radiology 2011;79(2):299-304. Abstract/PDF DOI PMID 20346606

  14. B. van Ginneken, C.M. Schaefer-Prokop and M. Prokop. "Computer-aided Diagnosis: how to Move from the Laboratory to the Clinic", Radiology 2011;261(3):719-732. Abstract/PDF DOI PMID 22095995

  15. T. Hambrock, D.M. Somford, H.J. Huisman, I.M. van Oort, J.A. Witjes, C.A. Hulsbergen-van de Kaa, T. Scheenen and J.O. Barentsz. "Relationship between Apparent Diffusion Coefficients at 3.0-T MR Imaging and Gleason Grade in Peripheral Zone Prostate Cancer", Radiology 2011;259(2):453-461. Abstract/PDF DOI PMID 21406633

  16. G.J. den Heeten and N. Karssemeijer. "[Computerised assessment of screening mammograms]", Nederlands Tijdschrift voor Geneeskunde 2011;155(18):A3025. Abstract/PDF URL PMID 21466728

  17. C.M.A. Hoeks, J.O. Barentsz, T. Hambrock, D. Yakar, D.M. Somford, S.W.T.P.J. Heijmink, T.W.J. Scheenen, P.C. Vos, H. Huisman, I.M. van Oort, J.A. Witjes, A. Heerschap and J.J. Fütterer. "Prostate Cancer: Multiparametric MR Imaging for Detection, Localization, and Staging", Radiology 2011;261(1):46-66. Abstract/PDF DOI PMID 21931141

  18. P.A. de Jong, J.A. Achterberg, O.A.M. Kessels, B. van Ginneken, L. Hogeweg, F.J. Beek and S.W.J. Terheggen-Lagro. "Modified Chrispin-Norman chest radiography score for cystic fibrosis: observer agreement and correlation with lung function", European Radiology 2011;21:722-729. Abstract/PDF DOI PMID 20924586

  19. M.G. Kallenberg, M. Lokate, C.H. van Gils and N. Karssemeijer. "Automatic breast density segmentation: an integration of different approaches", Physics in Medicine and Biology 2011;56(9):2715-2729. Abstract/PDF DOI PMID 21464531

  20. M. Kox, J. Pompe, E. Peters, Vaneker M., J. van der Laak, J. van der Hoeven, G. Scheffer, C. Hoedemaekers and P. Pickkers. "a7 Nicotinic acetylcholine receptor agonist GTS-21 attenuates ventilator-induced tumour necrosis factor-a production and lung injury", British Journal of Anaesthesia 2011;107(4):559-566. Abstract/PDF DOI

  21. R.M. Mann, J. Veltman, H. Huisman and C. Boetes. "Comparison of enhancement characteristics between invasive lobular carcinoma and invasive ductal carcinoma", Journal of Magnetic Resonance Imaging 2011;34(2):293-300. Abstract/PDF DOI PMID 21780225

  22. A. Melbourne, J. Hipwell, M. Modat, T. Mertzanidou, H. Huisman, S. Ourselin and D.J. Hawkes. "The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI", Physics in Medicine and Biology 2011;56(24):7693-7708. Abstract/PDF DOI PMID 22086390

  23. A.M. Mendrik, E. Vonken, B. van Ginneken, H.W. de Jong, A. Riordan, T. van Seeters, E.J. Smit, M.A. Viergever and M. Prokop. "TIPS bilateral noise reduction in 4D CT perfusion scans produces high-quality cerebral blood flow maps", Physics in Medicine and Biology 2011;56:3857-3872. Abstract/PDF DOI PMID 21654042

  24. O.M. Mets, C.F.M. Buckens, P. Zanen, I. Išgum, B. van Ginneken, M. Prokop, H.A. Gietema, J.W.J. Lammers, R. Vliegenthart, M. Oudkerk, R.J. van Klaveren, H.J. de Koning, W.P.T.M. Mali and P.A. de Jong. "Identification of Chronic Obstructive Pulmonary Disease in Lung Cancer Screening Computed Tomographic Scans", Journal of the American Medical Association 2011;306(16):1775-1781. Abstract/PDF DOI PMID 22028353

  25. F.A.A. Mohamed Hoesein, B. de Hoop, P. Zanen, H. Gietema, C.L.J.J. Kruitwagen, B. van Ginneken, I. Išgum, C. Mol, R.J. van Klaveren, A.E. Dijkstra, H.J.M. Groen, H.M. Boezen, D.S. Postma, M. Prokop and J.-W.J. Lammers. "CT-quantified emphysema in male heavy smokers: association with lung function decline", Thorax 2011;66:782-787. Abstract/PDF DOI PMID 21474499

  26. F.A.A. Mohamed Hoesein, P. Zanen, B. van Ginneken, R.J. van Klaveren and J.-W.J. Lammers. "Association of the transfer coefficient of the lung for carbon monoxide with emphysema progression in male smokers", European Respiratory Journal 2011;38:1012-1018. Abstract/PDF DOI PMID 21565924

  27. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B.J. de Hoop, M.A. Viergever and J.P.W. Pluim. "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis 2011;15(1):71-84. Abstract/PDF DOI PMID 20709592

  28. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G.E. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M.P. Heinrich, J.A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J.R. McClelland, S. Ourselin, S.E.A. Muenzing, M.A. Viergever, D.D. Nigris, D.L. Collins, T. Arbel, M. Peroni, R. Li, G.C. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J.C. Gee, M. Staring, S. Klein, B.C. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J.P.W. Pluim. "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging 2011;31(11):1901-1920. Abstract/PDF DOI PMID 21632295

  29. M. Nielsen, G. Karemore, M. Loog, J. Raundahl, N. Karssemeijer, J.D.M. Otten, M.A. Karsdal, C.M. Vachon and C. Christiansen. "A novel and automatic mammographic texture resemblance marker is an independent risk factor for breast cancer", Cancer Epidemiology 2011;35(4):381-387. Abstract/PDF DOI PMID 21146484

  30. M. Niemeijer, M. Loog, M.D. Abràmoff, M.A. Viergever, M. Prokop and B. van Ginneken. "On Combining Computer-Aided Detection Systems", IEEE Transactions on Medical Imaging 2011;30(2):215-223. Abstract/PDF DOI PMID 20813633

  31. M. Niemeijer, X. Xu, A. Dumitrescu, P. Gupta, B. van Ginneken, J. Folk and M. Abràmoff. "Automated measurement of the arteriolar-to-venular width ratio in digital color fundus photographs", IEEE Transactions on Medical Imaging 2011;31(11):1941-1950. Abstract/PDF DOI PMID 21690008

  32. M. Nillesen, R. Lopata, H.J. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "Correlation based 3-D segmentation of the left ventricle in pediatric echocardiographic images using radio-frequency data", Ultrasound in Medicine and Biology 2011;37(9):1409-1420. Abstract/PDF DOI PMID 21683512

  33. A.B. Rosenkrantz, M. Oei, J.S. Babb, B.E. Niver and B. Taouli. "Diffusion-weighted imaging of the abdomen at 3.0 Tesla: image quality and apparent diffusion coefficient reproducibility compared with 1.5 Tesla", Journal of Magnetic Resonance Imaging 2011;33(1):128-135. Abstract/PDF DOI PMID 21182130

  34. C.I. Sanchez, M. Niemeijer, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Evaluation of a Computer-Aided Diagnosis system for Diabetic Retinopathy screening on public data", Investigative Ophthalmology and Visual Science 2011;52:4866-4871. Abstract/PDF DOI PMID 21527381

  35. M. Samulski and N. Karssemeijer. "Optimizing Case-based Detection Performance in a Multiview CAD System for Mammography", IEEE Transactions on Medical Imaging 2011;30(4):1001-1009. Abstract/PDF DOI PMID 21233045

  36. G. van Schie, C. Tanner, P. Snoeren, M. Samulski, K. Leifland, M.G. Wallis and N. Karssemeijer. "Correlating locations in ipsilateral breast tomosynthesis views using an analytical hemispherical compression model", Physics in Medicine and Biology 2011;56(15):4715-4730. Abstract/PDF DOI PMID 21737868

  37. J. Seabra, F. Ciompi, O. Pujol, J. Mauri, P. Radeva and J. Sanches. "Rayleigh mixture model for plaque characterization in intravascular ultrasound", IEEE Transactions on Biomedical Engineering 2011;58(5):1314-1324. Abstract/PDF URL

  38. R. Wittenberg, J.F. Peters, J.J. Sonnemans, S. Bipat, M. Prokop and C.M. Schaefer-Prokop. "Impact of image quality on the performance of computer-aided detection of pulmonary embolism", American Journal of Roentgenology 2011;196(1):95-101. Abstract/PDF DOI PMID 21178052

  39. D. Yakar, S.W.T.P.J. Heijmink, C.A. Hulsbergen-van de Kaa, H. Huisman, J.O. Barentsz, J.J. Fütterer and T.W.J. Scheenen. "Initial results of 3-dimensional 1H-magnetic resonance spectroscopic imaging in the localization of prostate cancer at 3 Tesla: should we use an endorectal coil?", Investigative Radiology 2011;46(5):301-306. Abstract/PDF DOI PMID 21217527


Papers in conference proceedings

  1. M. Alberti, C. Gatta, S. Balocco, F. Ciompi, O. Pujol, J. Silva, X. Carrillo and P. Radeva. "Automatic branching detection in IVUS sequences", in: Pattern Recognition and Image Analysis, 2011, pages 126-133. Abstract/PDF URL

  2. S. Balocco, C. Gatta, F. Ciompi, O. Pujol, X. Carrillo, J. Mauri and P. Radeva. "Combining Growcut and temporal correlation for IVUS lumen segmentation", in: Pattern Recognition and Image Analysis, 2011, pages 556-563. Abstract/PDF URL

  3. D. Chong, E.M. van Rikxoort, H.J. Kim, J.G. Goldin and M.S. Brown. "Scan-rescan reproducibility of CT densitometric measures of emphysema", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 796339-1-796339-6. Abstract/PDF DOI

  4. F. Ciompi, O. Pujol, C. Gatta, X. Carrillo, J. Mauri and P. Radeva. "A holistic approach for the detection of media-adventitia border in IVUS", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2011, pages 411-419. Abstract/PDF URL

  5. P.R. Devarakota, D.M. Siddu, P. Maduskar, S. Vikal and L. Raghupathi. "Automatic lung nodule detection in thick slice CT: a comparative study of different gating schemes in CAD", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 79630E. Abstract/PDF DOI

  6. L. Gallardo-Estrella and A. Poncela. "Human/Robot Interface for Voice Teleoperation of a Robotic Platform", in: Advances in Computational Intelligence , volume 6691 of Lecture Notes in Computer Science, 2011, pages 240-247. Abstract/PDF DOI

  7. A. Gubern-Merida, M. Kallenberg, R. Marti and N. Karssemeijer. "Multi-class probabilistic atlas-based segmentation method in breast MRI", in: Pattern Recognition and Image Analysis: proceedings of 5th Iberian Conference, volume 5, 2011. Abstract/PDF

  8. A. Gubern-Merida, M. Kallenberg, R. Marti and N. Karssemeijer. "Fully automatic fibroglandular tissue segmentation in breast MRI: atlas-based approach", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  9. J. Huo, E.M. van Rikxoort, K. Okada, H.J. Kim, W. Pope, J.G. Goldin and M.S. Brown. "Confidence-based ensemble for GBM brain tumor segmentation", in: Medical Imaging, volume 7962 of Proceedings of the SPIE, 2011, pages 79622P-1-79622P-6. Abstract/PDF DOI

  10. C. Jacobs, K. Murphy, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 177-182. Abstract/PDF

  11. C. Jacobs, C.I. Sanchez, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT images using Shape, Intensity and Context Features", in: Medical Image Computing and Computer-Assisted Intervention, volume 6893 of Lecture Notes in Computer Science, 2011, pages 207-214. Abstract/PDF DOI PMID 22003701

  12. M. Kallenberg, M. Lokate, C. van Gils and N. Karssemeijer. "Automatic breast density segmentation based on pixel classification", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 1, page 796307. Abstract/PDF DOI

  13. B. Lassen, J.M. Kuhnigk, E.M. van Rikxoort and H.O. Peitgen. "Interactive lung lobe segmentation and correction in tomographic images", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631S-1-79631S-6. Abstract/PDF DOI

  14. J. Lesniak, R. Hupse, M. Kallenberg, M. Samulski, R. Blanc, N. Karssemeijer and G. Szekely. "Computer Aided Detection of Breast Masses in Mammography using Support Vector Machine Classification", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 1, page 79631K. Abstract/PDF DOI

  15. G. Litjens, P. Vos, J. Barentsz, N. Karssemeijer and H. Huisman. "Automatic Computer Aided Detection of Abnormalities in Multi-Parametric Prostate MRI", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 1. Abstract/PDF DOI

  16. P. Lo, E.M. van Rikxoort, J.G. Goldin, F. Abtin, M. de Bruijne and M.S. Brown. "A bottom-up approach for labeling of human airway trees", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 23-34. Abstract

  17. P. Maduskar, P.R. Devarakota and S. Vikal. "Automatic detection of lung vessel bifurcation in thoracic CT Images", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 796334. Abstract/PDF DOI

  18. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong, N. Karssemeijer and B. van Ginneken. "Cavity segmentation in chest radiographs", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011. Abstract/PDF

  19. M. Niemeijer, A.V. Dumitrescu, B. van Ginneken and M.D. Abràmoff. "Automatic localization of bifurcations and vessel crossings in digital fundus photographs using location regression", in: Medical Imaging, volume 7965 of Proceedings of the SPIE, 2011, page 796507. Abstract/PDF DOI

  20. B. Platel, H. Huisman, H. Laue, R. Mus, R. Mann, H. Hahn and N. Karssemeijer. "Computerized Characterization of Breast Lesions using Dual-Temporal Resolution Dynamic Contrast-Enhanced MR Images", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  21. M. Radstake, M. Velikova, P. Lucas and M. Samulski. "Critiquing Knowledge Representation in Medical Image Interpretation using Structure Learning", in: Knowledge Representation for Health-Care (KR4HC), volume 6512 of Lecture Notes in Artificial Intelligence, 2011, pages 56-70.

  22. E.M. van Rikxoort and B. van Ginneken. "Automatic segmentation of the lungs and lobes from thoracic CT scans", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 261-268. Abstract/PDF

  23. E.M. van Rikxoort, J.G. Goldin, M. Galperin-Aizenberg and M.S. Brown. "Classification of pulmonary emphysema from chest CT scans using integral geometry descriptors", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631O-1-79631O-6. Abstract/PDF DOI

  24. S. Robben, M. Velikova, P.J. Lucas and M. Samulski. "Discretisation Does Affect the Performance of Bayesian Networks", in: Research and Development in Intelligent Systems XXVII, 2011, pages 237-250. Abstract/PDF DOI

  25. M. Samulski, P. Snoeren, B. Platel, B. van Ginneken, L. Hogeweg, C. Schaefer-Prokop and N. Karssemeijer. "Computer-Aided Detection as a Decision Assistant in Chest Radiography", in: Medical Imaging, volume 7966 of Proceedings of the SPIE, 2011, page 1, pages 796614-1-796614-6. Abstract/PDF DOI

  26. G. van Schie, C. Tanner and N. Karssemeijer. "Estimating corresponding locations in ipsilateral breast tomosynthesis views", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 796306. Abstract/PDF DOI

  27. T. Tan, H. Huisman, B. Platel, A. Grivignee, R. Mus and N. Karssemeijer. "Classification of Breast Lesions in Automated 3D Breast Ultrasound", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 79630X. Abstract/PDF DOI

  28. T. Tan, B. Platel, H. Huisman and N. Karssemeijer. "Chest wall segmentation in automated 3D breast ultrasound using a cylinder model", in: MICCAI Workshop: Breast Image Analysis, 2011. PDF

  29. T. Tan, B. Platel, T. Twellmann, G. van Schie, R. Mus, A. Grivegnee, L. Tabar and N. Karssemeijer. "Computer aided interpretation of lesions in automated 3D breast ultrasound", in: MICCAI Workshop: Breast Image Analysis, 2011. PDF

  30. C. Tanner, G. van Schie, N. Karssemeijer and G. Szekely. "Matching Regions for Mammographic Views: Comparison and Compensation for Deformations", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  31. W.J.M. van de Ven, G. Litjens, J.O. Barentsz, T. Hambrock and H.J. Huisman. "Required accuracy of MR-US registration for prostate biopsies", in: Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions, volume 6963 of Lecture Notes in Computer Science, 2011, pages 92-99. Abstract/PDF DOI

  32. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, A. van der Lugt and W. Niessen. "Region Based Level Set Segmentation of the Outer Wall of the Carotid Bifurcation in CTA", in: Medical Imaging, volume 7962 of Proceedings of the SPIE, 2011, pages 79623P-1 - 79623P-8. Abstract/PDF DOI


Abstracts

  1. S. Amin, J. Goldin, M. Zeidler, E. Kleerup, P. Lu, M. Galperin-Aizenberg, E.M. van Rikxoort, D. Gjertson and D. Ross. "Air trapping on HRCT assessed by quantitative image analysis as an early predictor of bronchiolitis obliterans syndrome in lung transplant recipients", in: American Thoracic Society International Conference, 2011. Abstract

  2. D. Chong, H. Kim, E. van Rikxoort, M. Galperin, K. Yang, Y. Jung, M. McNitt-Gray, J. Goldin and M. Brown. "Reproducibility of densitometric measures of emphysema in computed tomography scans one week apart: the effect of breathhold and scanner calibration", in: American Thoracic Society International Conference, 2011. Abstract

  3. P. Ciet, P. Wielopolski, S. Lever, R. Manniesing, M. de Bruijne, M. Lequin and H. Tiddens. "MRI Tracheomalacia Assessment in Pediatric Patients: Feasibility Study", in: European Congress of Radiology, 2011. Abstract/PDF

  4. O. Debats, T. Hambrock, G. Litjens, H. Huisman and J. Barentsz. "Detection of Lymph Node Metastases with Ferumoxtran-10 vs Ferumoxytol", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  5. M. Galperin-Aizenberg, E.M. van Rikxoort, M.S. Brown, H. Kim, F. Abtin and J.G. Goldin. "Automatic Fissural Integrity Quantification from Chest CT Predicts Lobar Atelectasis in Endobronchial Treatment", in: American Thoracic Society International Conference, 2011. Abstract

  6. L. Hogeweg, A. Story, A. Hayward, R. Aldridge, I. Abubakar, P. Maduskar and B. van Ginneken. "Computer-aided detection of tuberculosis among high risk groups: potential for automated triage", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  7. I. Išgum, P.A. de Jong, W. Mali, B. van Ginneken, M. Prokop and M.A. Viergever. "Automatic Coronary Calcium Scoring in Low-Dose Non-ECG-synchronized Chest Computed Tomography (CT) Scans from a Lung Cancer Screening Trial", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  8. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  9. G. Karemore, S. Brandt, N. Karssemeijer and M. Nielsen. "Discovery of Mammogram Regions That Show Early Changes Due to the Development of Breast Cancer: A Preliminary Work", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  10. N. Karssemeijer, R. Hupse, M. Samulski, D. Beijerinck, G.D. Heeten and C. Boetes. "Concurrent Interactive Use of CAD for Detection of Masses in Mammograms", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  11. N. Karssemeijer, T. Tan, B. Platel, T. Twellmann, L. Tabar, A. Grivignee, R. Mus and H. Huisman. "A Novel System for Computer-aided Lesion Classification in Automated 3D Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract/PDF

  12. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Zone-specific Automatic Computer-aided Detection of Prostate Cancer in MRI", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  13. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong and B. van Ginneken. "Automatic Size Measurement of Cavities on Chest Radiographs Using Supervised Learning and Dynamic Programming", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  14. N. Karssemeijer, T. Tan, T. Twellmann, G. van Schie, A. Grivignee, L. Tabar, R. Mann and R. Mus. "Computer Aided Interpretation of Lesions in Automated 3D Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract/PDF

  15. M.T.H. Oei, B.M. Goraj, F.J.A. Meijer, J.J. Mordang, A.J. Idema, S.H.E. Boots-Sprenger, H.O.A. Laue and M.Prokop. "Variability of relative cerebral blood volume normalization in patients with gliomas: Interobserver and intraobserver reproducibility study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2011. Abstract

  16. B. Platel, H. Huisman, H. Laue, R. Mann, H. Hahn, N. Karssemeijer and R. Mus. "Computerized Characterization of Breast Masses Using Dual-Temporal Resolution Dynamic Contrast-enhanced MR Images", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  17. E.M. van Rikxoort, M. Galperin-Aizenberg, C. Jude, J.G. Goldin and M. Brown. "Quantifying Emphysema From Chest Computed Tomography Scans Using Integral Geometry Descriptors: Improved Performance Over Density Measures In Low Dose Scans", in: American Thoracic Society International Conference, 2011. Abstract

  18. E.M. van Rikxoort, M.Galperin-Aizenberg, F. Abtin, H.J. Kim, P. Lu, G. Shaw, J.G. Goldin and M. Brown. "Pulmonary Fissure Integrity Assessment in Subjects with Severe Emphysema: Evaluation of a Fully Automatic Method", in: American Thoracic Society International Conference, 2011. Abstract

  19. S. Schalekamp, B. Heggelman and C. Schaefer-Prokop. ""Focal lesions on Gadoxetate disodium enhanced and diffusionweighted liver MRI: a guidance for differential diagnosis"", in: European Congress of Radiology, 2011. PDF

  20. M.G. Schouten, K. Nagel, T. Hambrock, C. Hoeks, G. Litjens, J. Barentsz and J. Fütterer. "Differentiation of Normal Prostate Tissue, Prostatitis, and Prostate Cancer: Correlation between Diffusion-weighted Imaging and MR-guided Biopsy", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  21. B. Schroeder, R. Highnam, A. Cave, J. Walker, N. Karssemeijer, M. Yaffe, R. Jong and O. Alonzo-Proulx. "At What Age Should Breast Screening Begin?", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  22. P. Wielopolski, P. Ciet, R. Manniesing, S. Lever, M. Lequin, G. Krestin and H. Tiddens. "Automated Airway Lumen Segmentation and Characterization in Patients with Tracheomalacia: a Feasibility Study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2011. Abstract/PDF


Theses

  1. M.E.A.P.M. Adriaensen. "Imaging in tuberous sclerosis complex", PhD thesis, Utrecht University, 2011. Abstract/PDF URL

  2. E. Brunenberg. "Hitting the right target : noninvasive localization of the subthalamic nucleus motor part for specific deep brain stimulation", PhD thesis, Eindhoven University of Technology, 2011. Abstract/PDF URL

  3. K. Murphy. "Development and evaluation of automated image analysis techniques in thoracic CT", PhD thesis, Utrecht University, 2011. Abstract/PDF URL

  4. M. Samulski. "Computer Aided Detection as a Decision Aid in Medical Screening", PhD thesis, Radboud University, Nijmegen, 2011. Abstract/PDF URL

  5. M.J. Stoutjesdijk. "Automated analysis of contrast enhancement in magnetic resonance imaging of the breast", PhD thesis, Radboud University, Nijmegen, 2011. Abstract/PDF URL

  6. P. Vos. "Computer Aided Diagnosis of Prostate Cancer with Magnetic Resonance Imaging", PhD thesis, Radboud University, Nijmegen, 2011. Abstract/PDF URL


Other publications

  1. R. Beichel, M. de Bruijne, B. van Ginneken, S. Kabus, A. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, E.M. van Rikxoort and S. Rit. "The Fourth International Workshop on Pulmonary Image Analysis", 2011. Abstract/PDF URL

  2. A. Madabhushi, J. Dowling, H. Huisman and D. Barratt. "Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions", 2011. DOI


2010

Papers in international journals

  1. M.E.A.P.M. Adriaensen, M.J.M. Cramer, M.E.E. Brouha, C.M. Schaefer-Prokop, M. Prokop, P.A.F.M. Doevendans, B.A. Zonnenberg and H.H.H. Feringa. "Echocardiographic screening results in patients with tuberous sclerosis complex", Texas Heart Institute Journal 2010;37(3):280-283. Abstract/PDF PMID 20548802

  2. Y. Arzhaeva, M. Prokop, K. Murphy, E.M. van Rikxoort, P.A. de Jong, H.A. Gietema, M.A. Viergever and B. van Ginneken. "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics 2010;37(1):63-73. Abstract/PDF DOI PMID 20175467

  3. A.M.J. Bluekens, N. Karssemeijer, D. Beijerinck, J.J.M. Deurenberg, R.E. van Engen, M.J.M. Broeders and G.J. den Heeten. "Consequences of digital mammography in population-based breast cancer screening: initial changes and long-term impact on referral rates", European Radiology 2010;20(9):2067-2073. Abstract/PDF DOI PMID 20407901

  4. F. Ciompi, O. Pujol, C. Gatta, O. Rodriguez-Leor, J. Mauri-Ferre and P. Radeva. "Fusing in-vitro and in-vivo intravascular ultrasound data for plaque characterization", International Journal of Cardiac Imaging 2010;26(7):763-779. Abstract/PDF URL PMID 20091123

  5. H.A. Gietema, P. Zanen, A. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W. Lammers. "Distribution of emphysema in heavy smokers: impact on pulmonary function", Respiratory Medicine 2010;104(1):76-82. Abstract/PDF DOI PMID 19734030

  6. H.A. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W.J. Lammers. "Reply to Hochheggar et al", Respiratory Medicine 2010;104(7):1074. PDF DOI

  7. B. van Ginneken, S.G. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A.M.R. Schilham, A. Retico, M.E. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F.D. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S.C. Cheran, E.L. Torres and M. Prokop. "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis 2010;14:707-722. Abstract/PDF DOI PMID 20573538

  8. T. Hambrock, D.M. Somford, C. Hoeks, S.A.W. Bouwense, H. Huisman, D. Yakar, I.M. van Oort, J.A. Witjes, J.J. Fütterer and J.O. Barentsz. "Magnetic resonance imaging guided prostate biopsy in men with repeat negative biopsies and increased prostate specific antigen", Journal of Urology 2010;183(2):520-527. Abstract/PDF DOI PMID 20006859

  9. I.J.C. Hartmann, R. Wittenberg and C. Schaefer-Prokop. "Imaging of acute pulmonary embolism using multi-detector CT angiography: an update on imaging technique and interpretation", European Journal of Radiology 2010;74(1):40-49. PDF DOI PMID 20227213

  10. B. de Hoop, D.W. de Boo, H.A. Gietema, F. van Hoorn, B. Mearadji, L. Schijf, B. van Ginneken, M. Prokop and C. Schaefer-Prokop. "Computer-aided Detection of Lung Cancer on Chest Radiographs: Effect on Observer Performance", Radiology 2010;257(2):532-540. Abstract/PDF DOI PMID 20807851

  11. B. de Hoop, H. Gietema, S. van de Vorst, K. Murphy, R.J. van Klaveren and M. Prokop. "Pulmonary ground-glass nodules: increase in mass as an early indicator of growth", Radiology 2010;255(1):199-206. Abstract/PDF DOI PMID 20123896

  12. B. de Hoop, C.M. Schaefer-Prokop, H.A. Gietema, P.A. de Jong, B. van Ginneken, R.J. van Klaveren and M. Prokop. "Screening for lung cancer with digital chest radiography: sensitivity and number of secondary work-up CT examinations", Radiology 2010;255(2):629-637. Abstract/PDF DOI PMID 20413773

  13. Y. Hu, R. van den Boom, T. Carter, Z. Taylor, D. Hawkes, H.U. Ahmed, M. Emberton, C. Allen and D. Barratt. "A comparison of the accuracy of statistical models of prostate motion trained using data from biomechanical simulations", Progress in Biophysics and Molecular Biology 2010;103(2-3):262-272. Abstract/PDF DOI PMID 20869389

  14. R. Hupse and N. Karssemeijer. "The effect of feature selection methods on computer-aided detection of masses in mammograms", Physics in Medicine and Biology 2010;55(10):2893-2904. Abstract/PDF DOI PMID 20427855

  15. I. Išgum, A. Rutten, M. Prokop, M.Staring, S. Klein, J.P.W. Pluim, M.A. Viergever and B. van Ginneken. "Automated aortic calcium scoring on low-dose chest computed tomography", Medical Physics 2010;37(2):714-723. Abstract/PDF DOI PMID 20229881

  16. P.C.A. Jacobs, I. Išgum, M.J.A. Gondrie, W.P.T.M. Mali, B. van Ginneken, M. Prokop and Y. der Graaf. "Coronary artery calcification scoring in low-dose ungated CT screening for lung cancer: interscan agreement", American Journal of Roentgenology 2010;194(5):1244-1249. Abstract/PDF DOI PMID 20410410

  17. P.C. Jacobs, M. Prokop, Y. van der Graaf, M.J. Gondrie, K.J. Janssen, H.J. de Koning, I. Išgum, R.J. van Klaveren, M. Oudkerk, B. van Ginneken and W.P. Mali. "Comparing coronary artery calcium and thoracic aorta calcium for prediction of all-cause mortality and cardiovascular events on low-dose non-gated computed tomography in a high-risk population of heavy smokers", Atherosclerosis 2010;209(2):455-462. Abstract/PDF DOI PMID 19875116

  18. M.A.J.M. Lokate, M.G.J. Kallenberg, N. Karssemeijer, M.A.A.J. van den Bosch, P.H.M. Peeters and C.H. van Gils. "Volumetric breast density from full-field digital mammograms and its association with breast cancer risk factors: a comparison with a threshold method", Cancer Epidemiology Biomarkers and Prevention 2010;19(12):3096-3105. Abstract/PDF DOI PMID 20921336

  19. R. Manniesing, M. Schaap, S. Rozie, R. Hameeteman, D. Vukadinovic, A. van der Lugt and W. Niessen. "Robust CTA lumen segmentation of the atherosclerotic carotid artery bifurcation in a large patient population", Medical Image Analysis 2010;14(6):759-769. Abstract/PDF DOI PMID 20605737

  20. A. Mendrik, E. Vonken, B. van Ginneken, E.J. Smit, A. Waaijer, G. Bertolini, M.A. Viergever and M. Prokop. "Automatic segmentation of intracranial arteries and veins in four-dimensional cerebral CT perfusion scans", Medical Physics 2010;37(6):2956-2966. Abstract/PDF DOI PMID 20632608

  21. M. Niemeijer, B. van Ginneken, M.J. Cree, A. Mizutani, G. Quellec, C.I. Sanchez, B. Zhang, R. Hornero, M. Lamard, C. Muramatsu, X. Wu, G. Cazuguel, J. You, A. Mayo, Q. Li, Y. Hatanaka, B. Cochener, C. Roux, F. Karray, M. Garcia, H. Fujita and M.D. Abràmoff. "Retinopathy online challenge: automatic detection of microaneurysms in digital color fundus photographs", IEEE Transactions on Medical Imaging 2010;29(1):185-195. Abstract/PDF DOI PMID 19822469

  22. J. Patel, E.E. Sigmund, H. Rusinek, M. Oei, J.S. Babb and B. Taouli. "Diagnosis of cirrhosis with intravoxel incoherent motion diffusion MRI and dynamic contrast-enhanced MRI alone and in combination: preliminary experience", Journal of Magnetic Resonance Imaging 2010;31(3):589-600. Abstract/PDF DOI PMID 20187201

  23. E.M. van Rikxoort, I. Išgum, Y. Arzhaeva, M. Staring, S. Klein, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus", Medical Image Analysis 2010;14(1):39-49. Abstract/PDF DOI PMID 19897403

  24. E.M. van Rikxoort, M. Prokop, B. de Hoop, M. Viergever, J. Pluim and B. van Ginneken. "Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures", IEEE Transactions on Medical Imaging 2010;29(6):1286-1296. Abstract/PDF DOI PMID 20304724

  25. M. Samulski, R. Hupse, C. Boetes, R. Mus, G. den Heeten and N. Karssemeijer. "Using Computer Aided Detection in Mammography as a Decision Support", European Radiology 2010;20(10):2323-2330. Abstract/PDF DOI PMID 20532890

  26. D.F. Stegeman, W.J.M. van de Ven, G.A. van Elswijk, R. Oostenveld and B.U. Kleine. "The alpha-motoneuron pool as transmitter of rhythmicities in cortical motor drive", Clinical Neurophysiology 2010;121(10):1633-1642. Abstract/PDF DOI PMID 20434397

  27. E. Tanck, J.C.W. Deenen, H.J. Huisman, J.G. Kooloos, H. Huizenga and N. Verdonschot. "An anatomically shaped lower body model for CT scanning of cadaver femurs", Physics in Medicine and Biology 2010;55(2):N57-N62. Abstract/PDF DOI PMID 20023325

  28. S. Timp, C. Varela and N. Karssemeijer. "Computer-aided diagnosis with temporal analysis to improve radiologists' interpretation of mammographic mass lesions", IEEE Transactions on Information Technology in Biomedicine 2010;14(3):803-808. Abstract/PDF DOI PMID 20403792

  29. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Computer-assisted analysis of peripheral zone prostate lesions using T2-weighted and dynamic contrast enhanced T1-weighted MRI", Physics in Medicine and Biology 2010;55(6):1719-1734. Abstract/PDF DOI PMID 20197602

  30. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, R. Hameeteman, T.T. de Weert, A. van der Lugt and W.J. Niessen. "Segmentation of the outer vessel wall of the common carotid artery in CTA", IEEE Transactions on Medical Imaging 2010;29(1):65-76. Abstract/PDF DOI PMID 19556191

  31. R. Wittenberg, J.F. Peters, J.J. Sonnemans, M. Prokop and C.M. Schaefer-Prokop. "Computer-assisted detection of pulmonary embolism: evaluation of pulmonary CT angiograms performed in an on-call setting", European Radiology 2010;20(4):801-806. Abstract/PDF DOI PMID 19862534

  32. D. Yakar, T. Hambrock, H. Huisman, C.A. Hulsbergen-van de Kaa, E. van Lin, H. Vergunst, C.M.A. Hoeks, I.M. van Oort, J.A. Witjes, J.O. Barentsz and J.J. Fütterer. "Feasibility of 3T dynamic contrast-enhanced magnetic resonance-guided biopsy in localizing local recurrence of prostate cancer after external beam radiation therapy", Investigative Radiology 2010;45(3):121-125. Abstract/PDF DOI PMID 20065860


Papers in conference proceedings

  1. E. Brunenberg, R. Duits, B.M. ter Haar Romeny and B. Platel. "A Sobolev norm based distance measure for HARDI clustering: a feasibility study on phantom and real data", in: Medical Image Computing and Computer-Assisted Intervention, volume 13 of Lecture Notes in Computer Science, 2010, page Pt 1, pages 175-182. Abstract/PDF PMID 20879229

  2. F. Ciompi, O. Pujol and P. Radeva. "A meta-learning approach to conditional random fields using error-correcting output codes", in: International Conference on Pattern Recognition, 2010, pages 710-713. Abstract/PDF URL

  3. O.A. Debats, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Automated classification of lymph nodes in USPIO-enhanced MR-images: a comparison of three segmentation methods", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, page 76240Q. Abstract/PDF DOI

  4. E. van Dongen and B. van Ginneken. "Automatic segmentation of pulmonary vasculature in thoracic CT scans with local thresholding and airway wall removal", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 668-671. Abstract/PDF DOI

  5. A. Firouzian, R. Manniesing, H. Flach, R. Risselada, F. van Kooten, M. Sturkenboom, A. van der Lugt and W. Niessen. "Intracranial Aneurysm Segmentation in 3D CT Angiography: Method and Quantitative Validation", in: Medical Imaging, volume 7623 of Proceedings of the SPIE, 2010, pages 76233M-1-76233M-8. Abstract/PDF DOI

  6. C. Gatta, S. Balocco, F. Ciompi, R. Hemetsberger, O.R. Leor and P. Radeva. "Real-time gating of IVUS sequences based on motion blur analysis: method and quantitative validation", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2010, pages 59-67. Abstract/PDF DOI

  7. B. van Ginneken. "Computer-aided diagnosis in chest imaging: how to improve performance and avoid reinventing the wheel", in: IEEE International Symposium on Biomedical Imaging, 2010, page 274. PDF DOI

  8. L. Hogeweg, C. Mol, P.A. de Jong, R. Dawson, H. Ayles and B. van Ginneken. "Fusion of local and global detection systems to detect tuberculosis in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 650-657. Abstract/PDF DOI PMID 20879456

  9. L. Hogeweg, C. Mol, P.A. de Jong and B. van Ginneken. "Rib suppression in chest radiographs to improve classification of textural abnormalities", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240Y1-76240Y6. Abstract/PDF DOI

  10. H. Huisman, P. Vos, G. Litjens, T. Hambrock and J. Barentsz. "Computer aided detection of prostate cancer using t2w, DWI and DCE-MRI: methods and clinical applications", in: MICCAI Workshop: Prostate Cancer Imaging: Computer Aided Diagnosis, Prognosis, and Intervention, 2010. Abstract/PDF

  11. I. Išgum, M. Prokop, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240M1-76240M8. Abstract/PDF DOI

  12. C. Jacobs, K. Ma, P. Moin and B. Liu. "An automatic quantification system for MS lesions with integrated DICOM structured reporting (DICOM-SR) for implementation within a clinical environment", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, page 1, pages 76280K-76280K-8. Abstract/PDF DOI

  13. M.G.J. Kallenberg and N. Karssemeijer. "Comparison of Tilt Correction Methods in Full Field Digital Mammograms", in: IWDM '10: Proceedings of the 10th international workshop on Digital Mammography, 2010, pages 191-196. Abstract/PDF DOI

  14. N. Karssemeijer. "Computer aided detection in breast imaging: more than perception aid", in: IEEE International Symposium on Biomedical Imaging, 2010, page 273. PDF DOI

  15. T.T.J.P. Kockelkorn, P.A. de Jong, H.A. Gietema, J.C. Grutters, M. Prokop and B. van Ginneken. "Interactive annotation of textures in thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240X1-76240X8. Abstract/PDF DOI

  16. T.T.J.P. Kockelkorn, E.M. van Rikxoort, J.C. Grutters and B. van Ginneken. "Interactive lung segmentation in CT scans with severe abnormalities", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 564-567. Abstract/PDF DOI

  17. A.H. Le, Y.W. Park, K. Ma, C. Jacobs and B.J. Liu. "Performance evaluation for volumetric segmentation of multiple sclerosis lesions using MATLAB and computing engine in the graphical processing unit (GPU)", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, page 1, pages 76280W-76280W-6. Abstract/PDF DOI

  18. G. Litjens, M. Heisen, J. Buurman and B. ter Haar Romeny. "Pharmacokinetic models in clinical practice: what model to use for DCE-MRI of the breast?", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 185-188. Abstract/PDF

  19. G. Litjens, L. Hogeweg, A. Schilham, P. de Jong, M. Viergever and B. van Ginneken. "Simulation of nodules and diffuse infiltrates in chest radiographs using CT templates", in: Medical Image Computing and Computer-Assisted Intervention, volume 6362 of Lecture Notes in Computer Science, 2010, pages 396-403. Abstract/PDF DOI PMID 20879340

  20. P. Lo, B. van Ginneken and M. de Bruijne. "Vessel tree extraction using locally optimal paths", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 680-683. Abstract/PDF DOI

  21. K. Ma, C. Jacobs, J. Fernandez, L. Amezcua and B. Liu. "The development of a disease oriented eFolder for multiple sclerosis decision support", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, page 1, pages 76280G-76280G-7. Abstract/PDF DOI

  22. A. Makarau, H. Huisman, R. Mus, M. Zijp and N. Karssemeijer. "Breast MRI intensity non-uniformity correction using mean-shift", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, page 76242D. Abstract/PDF DOI

  23. A. Mendrik, E.P.A. Vonken, J.W. Dankbaar, M. Prokop and B. van Ginneken. "Noise filtering in thin-slice 4D cerebral CT perfusion scans", in: Medical Imaging, volume 7623 of Proceedings of the SPIE, 2010, pages 76230N1-76230N8. Abstract/PDF DOI

  24. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "Knowledge Driven Regularization of the Deformation Field for PDE Based Non-Rigid Registration Algorithms", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 127-136. Abstract/PDF

  25. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng and J.P.W. Pluim. "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 11-22. Abstract/PDF

  26. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic determination of the artery vein ratio in retinal images", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240I1-76240I10. Abstract/PDF DOI

  27. E. van Rikxoort, M. Galperin-Aizenberg, J.G. Goldin, T.T.J.P. Kockelkorn, B. van Ginneken and M.S. Brown. "Multi-classifier semi-supervised classification of tuberculosis patterns on chest CT scans", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 41-48. Abstract/PDF

  28. E.M. van Rikxoort, J.G. Goldin, B. van Ginneken, M. Galperin-Aizenberg, C. Ni and M.S. Brown. "Interactively learning a patient specific k-nearest neighbor classifier based on confidence weighted samples", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 556-559. Abstract/PDF DOI

  29. C.I. Sanchez, M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Active learning for an efficient training strategy of computer-aided diagnosis systems: application to diabetic retinopathy screening", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 603-610. Abstract/PDF DOI PMID 20879450

  30. C.I. Sanchez, M. Niemeijer, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Improving hard exudate detection in retinal images through a combination of local and contextual information", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 5-8. Abstract/PDF DOI

  31. G. van Schie, M.G.W.K. Leifland, E. Moa, M. Hemmendorff and N. Karssemeijer. "The Effect of Slab Size on Mass Detection Performance of a Screen-Film CAD System in Reconstructed Tomosynthesis Volumes", in: IWDM '10: Proceedings of the 10th international workshop on Digital Mammography, 2010, pages 497-504. Abstract/PDF DOI

  32. J. Seabra, J. Sanches, F. Ciompi and P. Radeva. "Ultrasonographic plaque characterization using a rayleigh mixture model", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 1-4. Abstract/PDF URL

  33. E.J. Smit, J. Dankbaar, A.M. Mendrik, B. van Ginneken, E. Vonken and M. Prokop. "Reconstruction of High Quality CT Angiography from Noisy Cerebral CT Perfusion Data", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  34. P.R. Snoeren, G. Litjens, B. van Ginneken and N. Karssemeijer. "Training a Computer Aided Detection System with Simulated Lung Nodules in Chest Radiographs", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 139-149. Abstract/PDF

  35. M. Velikova, P.J.F. Lucas and N. Karssemeijer. "Using local context information to improve automatic mammographic mass detection", in: Studies in Health Technology and Informatics, volume 160 of MEDINFO 2010 - Proceedings of the 13th World Congress on Medical Informatics, 2010, pages 1291-1295. Abstract/PDF DOI PMID 20841893


Abstracts

  1. J.P. van Dijk, W.J.M. van de Ven and D.F. Stegeman. "Evaluating the motor unit number index (MUNIX) as a measure for motor unit loss", in: International Society of Electrophysiology and Kinesiology, 2010. Abstract

  2. M.S. Dinesh, L. Raghupathi, P. Devarakota, P. Maduskar, M. Salganicoff and L. Bogoni. "Thick-slice lung nodule detection: CAD prototype performance evaluation", in: European Congress of Radiology, 2010. Abstract

  3. L. Hogeweg, C. Mol, P.A. de Jong, H. Ayles, R. Dawson and B. van Ginneken. "Evaluation of a computer aided detection system for tuberculosis on chest radiographs in a high-burden setting", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  4. H. Huisman, J. Veltman, M. Zijp, R. Mann, R. Mus and N. Karssemeijer. "Dual-Time Resolution Characterization of Masses on Breast DCEMR", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  5. J. van Kuijk, R. Manniesing, D. Goei, Y.R.B.M. van Gestel, S.E. Hoeks, M. Koek, J.J. Hermans, W. Niessen, H. Verhagen and D. Poldermans. "Automatic Quantication of Abdominal Visceral Fat Content: a True Marker for Metabolic Syndrome?", in: European Society of Cardiology, 2010. Abstract/PDF

  6. R. Manniesing, M. Koek, D. Goei, J. Hermans, W. Niessen and D. Poldermans. "Fully Automated Abdominal Fat Quantification using 3D Computed Tomography Angiography", in: European Congress of Radiology, 2010. Abstract/PDF

  7. C. Mol, B. van Ginneken, M. de Bruijne, P.A. de Jong, M. Oudkerk, A. Dirksen and P. Zanen. "Correction of Quantitative Emphysema Measures with Density Calibration Based on Measurements in the Trachea", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  8. W.J.M. van de Ven, J.P. van Basten, B.J. de Kruif, P. Dunias and F.P. Wieringa. "[Broad spectrum in vivo diffuse spectrometry - An exploration for improvements to the distinction of the neurovasular bundle during robot prostatectomy (RALP)]", in: Nederlands Tijdschrift voor Urologie, 2010. Abstract

  9. W.J.M. van de Ven, B.U. Kleine, G.A. van Elswijk, R. Oostenveld and D.F. Stegeman. "The alpha-motoneuron pool as transmitter of rhythmicities in cortical motor drive", in: International Society of Electrophysiology and Kinesiology, 2010. Abstract

  10. P.C. Vos, J.J. Fütterer, N. Karssemeijer and J.O.B.H. Huisman. "Computer-assisted Diagnosis of Prostate Cancer with Multimodal3T MR Imaging", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  11. P. Wielopolski, P. Ciet, G. Krestin, M. Lequin, H. Tiddens and R. Manniesing. "Automated airway lumen segmentation and characterization for use in patients with tracheomalacya: a feasibility study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2010. Abstract/PDF


Theses

  1. A. Gubern-Merida. "Multi-class probabilistic atlas-based segmentation method in breast MRI", Masters thesis, Universitat de Girona / Radboud University Nijmegen, 2010. PDF

  2. B. de Hoop. "Lung Cancer Screening: Radiological Aspects", PhD thesis, Utrecht University, 2010. Abstract/PDF URL

  3. A.M. Mendrik. "Noise Reduction and Vascular Enhancement in 4D CT Perfusion Scans", PhD thesis, Utrecht University, 2010. Abstract/PDF URL


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The Third International Workshop on Pulmonary Image Analysis", 2010. Abstract/PDF URL

  2. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng. "Medical Image Analysis for the Clinic: a Grand Challenge", 2010. Abstract/PDF URL

  3. N. Karssemeijer and P.R. Snoeren. "Image Processing", 2010. Abstract/PDF DOI

  4. M. Velikova, N. Ferreira, M. Samulski, P. Lucas and N. Karssemeijer. "An Advanced Probabilistic Framework for Assisting Screening Mammogram Interpretation", 2010. Abstract/PDF DOI


2009

Papers in international journals

  1. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Fatty foci in the myocardium in patients with tuberous sclerosis complex: common finding at CT", Radiology 2009;253(2):359-363. Abstract/PDF DOI PMID 19709996

  2. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, T. Stijnen, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Prevalence of subependymal giant cell tumors in patients with tuberous sclerosis and a review of the literature", European Journal of Neurology 2009;16(6):691-696. Abstract/PDF DOI PMID 19236458

  3. X. Artaechevarria, D. Perez-Martin, M. Ceresa, G. de Biurrun, D. Blanco, L.M. Montuenga, B. van Ginneken, C.O. de Solorzano and A. Muñoz-Barrutia. "Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT", Physics in Medicine and Biology 2009;54(22):7009-7024. Abstract/PDF DOI PMID 19887716

  4. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Dissimilarity-based classification in the absence of local ground truth: application to the diagnostic interpretation of chest radiographs", Pattern Recognition 2009;42(9):1768-1776. Abstract/PDF DOI

  5. D.W. de Boo, M. Prokop, M. Uffmann, B. van Ginneken and C.M. Schaefer-Prokop. "Computer-aided detection (CAD) of lung nodules and small tumours on chest radiographs", European Journal of Radiology 2009;72(2):218-225. Abstract/PDF DOI PMID 19747791

  6. R. Brecheisen, B. Platel, A. Vilanova and B.M. ter Haar Romeny. "Parameter sensitivity visualization for DTI fiber tracking", IEEE Transactions on Visualization and Computer Graphics 2009;15(6):1441-1448. Abstract/PDF DOI PMID 19834219

  7. M.F. Demirci, B. Platel, A. Shokoufandeh, L.L. Florack and S.J. Dickinson. "The Representation and Matching of Images Using Top Points", Journal of Mathematical Imaging and Vision 2009;35:103-116. Abstract/PDF DOI

  8. M. Garcia, C.I. Sanchez, M.I. Lopez, D. Abasolo and R. Hornero. "Neural network based detection of hard exudates in retinal images", Computer Methods and Programs in Biomedicine 2009;93(1):9-19. Abstract/PDF DOI PMID 18778869

  9. M. Garcia, C.I. Sanchez, J. Poza, M.I. Lopez and R. Hornero. "Detection of hard exudates in retinal images using a radial basis function classifier", Annals of Biomedical Engineering 2009;37(7):1448-1463. Abstract/PDF DOI PMID 19430906

  10. B. van Ginneken, L. Hogeweg and M. Prokop. "Computer-aided diagnosis in chest radiography: beyond nodules", European Journal of Radiology 2009;72(2):226-230. Abstract/PDF DOI PMID 19604661

  11. T. Heimann, B. van Ginneken, M. Styner, Y. Arzhaeva, V. Aurich, C. Bauer, A. Beck, C. Becker, R. Beichel, G. Bekes, F. Bello, G. Binnig, H. Bischof, A. Bornik, P. Cashman, Y. Chi, A. Cordova, B. Dawant, M. Fidrich, J. Furst, D. Furukawa, L. Grenacher, J. Hornegger, D. Kainmuller, R. Kitney, H. Kobatake, H. Lamecker, T. Lange, J. Lee, B. Lennon, R. Li, S. Li, H.-P. Meinzer, G. Nemeth, D. Raicu, A.-M. Rau, E. van Rikxoort, M. Rousson, L. Rusko, K. Saddi, G. Schmidt, D. Seghers, A. Shimizu, P. Slagmolen, E. Sorantin, G. Soza, R. Susomboon, J. Waite, A. Wimmer and I. Wolf. "Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets", IEEE Transactions on Medical Imaging 2009;28(8):1251-1265. Abstract/PDF DOI PMID 19211338

  12. C.M.A. Hoeks, J.J. Fütterer, D.M. Somford, I.M. van Oort, H. Huisman and J.O. Barentsz. "Multiparametric MRI for prostate cancer screening", Nederlands Tijdschrift voor Geneeskunde 2009;153:B487. Abstract/PDF PMID 20003566

  13. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen, G. Groenewegen and M. Prokop. "A comparison of six software packages for evaluation of solid lung nodules using semi-automated volumetry: what is the minimum increase in size to detect growth in repeated CT examinations", European Radiology 2009;19(4):800-808. Abstract/PDF DOI PMID 19018537

  14. R. Hupse and N. Karssemeijer. "Use of normal tissue context in computer-aided detection of masses in mammograms", IEEE Transactions on Medical Imaging 2009;28(12):2033-2041. Abstract/PDF DOI PMID 19666331

  15. J.E. Iglesias and N. Karssemeijer. "Robust initial detection of landmarks in film-screen mammograms using multiple FFDM atlases", IEEE Transactions on Medical Imaging 2009;28(11):1815-1824. Abstract/PDF DOI PMID 19520632

  16. I. Išgum, M. Staring, A. Rutten, M. Prokop, M. Viergever and B. van Ginneken. "Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans", IEEE Transactions on Medical Imaging 2009;28:1000-1010. Abstract/PDF DOI PMID 19131298

  17. N. Karssemeijer, A.M. Bluekens, D. Beijerinck, J.J. Deurenberg, M. Beekman, R. Visser, R. van Engen, A. Bartels-Kortland and M.J. Broeders. "Breast cancer screening results 5 years after introduction of digital mammography in a population-based screening program", Radiology 2009;253(2):353-358. Abstract/PDF DOI PMID 19703851

  18. A.M. Mendrik, E.-J. Vonken, A. Rutten, M.A. Viergever and B. van Ginneken. "Noise reduction in computed tomography scans using 3-d anisotropic hybrid diffusion with continuous switch", IEEE Transactions on Medical Imaging 2009;28(10):1585-1594. Abstract/PDF DOI PMID 19783496

  19. D.O. Mook-Kanamori, S. Holzhauer, L.M. Hollestein, B. Durmus, R. Manniesing, M. Koek, G. Boehm, E.M. van der Beek, A. Hofman, J.C.M. Witteman, M.H. Lequin and V.W.V. Jaddoe. "Abdominal fat in children measured by ultrasound and computed tomography", Ultrasound in Medicine and Biology 2009;35(12):1938-1946. Abstract/PDF DOI PMID 19800165

  20. K. Murphy, B. van Ginneken, A.M.R. Schilham, B.J. de Hoop, H.A. Gietema and M. Prokop. "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis 2009;13(5):757-770. Abstract/PDF DOI PMID 19646913

  21. C.G. van Niekerk, J.A.W.M. van der Laak, M.E. Börger, H. Huisman, J.A. Witjes, J.O. Barentsz and C.A. Hulsbergen-van de Kaa. "Computerized whole slide quantification shows increased microvascular density in pT2 prostate cancer as compared to normal prostate tissue", Prostate 2009;69(1):62-69. Abstract/PDF DOI PMID 18780292

  22. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Fast detection of the optic disc and fovea in color fundus photographs", Medical Image Analysis 2009;13(6):859-870. Abstract/PDF DOI PMID 19782633

  23. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Information fusion for diabetic retinopathy CAD in digital color fundus photographs", IEEE Transactions on Medical Imaging 2009;28(5):775-785. Abstract/PDF DOI PMID 19150786

  24. M. Nillesen, R. Lopata, W. de Boode, I. Gerrits, H. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "In vivo validation of cardiac output assessment in non-standard 3D echocardiographic images", Physics in Medicine and Biology 2009;54(7):1951-1962. Abstract/PDF DOI PMID 19265202

  25. E.M. van Rikxoort, B. de Hoop, M.A. Viergever, M. Prokop and B. van Ginneken. "Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection", Medical Physics 2009;36(7):2934-2947. Abstract/PDF DOI PMID 19673192

  26. E.M. van Rikxoort, B. de Hoop, S. van de Vorst, M. Prokop and B. van Ginneken. "Automatic segmentation of pulmonary segments from volumetric chest CT scans", IEEE Transactions on Medical Imaging 2009;28(4):621-630. Abstract/PDF DOI PMID 19211346

  27. E. Rollano-Hijarrubia, R. Manniesing and W. Niessen. "Selective deblurring for improved calcification visualization and quantification in carotid CT angiography: validation using micro-CT", IEEE Transactions on Medical Imaging 2009;28(3):446-453. Abstract/PDF DOI PMID 19244016

  28. C.I. Sanchez, M. Garcia, A. Mayo, M.I. Lopez and R. Hornero. "Retinal image analysis based on mixture models to detect hard exudates", Medical Image Analysis 2009;13(4):650-658. Abstract/PDF DOI PMID 19539518

  29. C. Schaefer-Prokop and M. Uffmann. "Update on digital radiography", European Journal of Radiology 2009;72(2):193. DOI PMID 19766420

  30. C.M. Schaefer-Prokop, D.W.D. Boo, M. Uffmann and M. Prokop. "DR and CR: Recent advances in technology", European Journal of Radiology 2009;72(2):194-201. Abstract/PDF DOI PMID 19695809

  31. M. Staring, J.P.W. Pluim, B.J. de Hoop, S. Klein, B. van Ginneken, H. Gietema, G. Nossent, C.M. Schaefer-Prokop, S. van de Vorst and M. Prokop. "Image Subtraction Facilitates Assessment of Volume and Density Change in Ground-Glass Opacities in Chest CT", Investigative Radiology 2009;44(2):61-66. Abstract/PDF DOI PMID 19104438

  32. M. Uffmann and C. Schaefer-Prokop. "Digital radiography: the balance between image quality and required radiation dose", European Journal of Radiology 2009;72(2):202-208. Abstract DOI PMID 19628349

  33. M. Velikova, M. Samulski, P.J.F. Lucas and N. Karssemeijer. "Improved mammographic CAD performance using multi-view information: a Bayesian network framework", Physics in Medicine and Biology 2009;54(5):1131-1147. Abstract/PDF DOI PMID 19174596


Papers in conference proceedings

  1. X. Artaechevarria, A. Muñoz-Barrutia, B. van Ginneken and C.O. de Solorzano. "Fast murine airway segmentation and reconstruction in micro-CT images", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, page 1, pages 72620B1-72620B8. Abstract/PDF DOI

  2. Y. Arzhaeva, L. Hogeweg, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Global and Local Multi-valued Dissimilarity-Based Classification: Application to Computer-Aided Detection of Tuberculosis", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, page 5762, pages 724-731. Abstract/PDF DOI

  3. F. Ciompi, O. Pujol, E. Fernandez-Nofrerias, J. Mauri and P. Radeva. "Ecoc random fields for lumen segmentation in radial artery ivus sequences", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 869-876. Abstract/PDF URL

  4. F. Ciompi, O. Pujol, O.R. Leor, C. Gatta, A.S. Vida and P. Radeva. "Enhancing in-vitro IVUS data for tissue characterization", in: Pattern Recognition and Image Analysis, 2009, pages 241-248. Abstract/PDF URL

  5. C. Gatta, J.D.G. Valencia, F. Ciompi, O.R. Leor and P. Radeva. "Toward robust myocardial blush grade estimation in contrast angiography", in: Pattern Recognition and Image Analysis, 2009, pages 249-256. URL

  6. R. Hupse and N. Karssemeijer. "The use of contextual information for computer aided detection of masses in mammograms", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, page 72600Q. Abstract/PDF DOI

  7. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J.P.W. Pluim. "Evaluation of 4D-CT Lung Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5761 of Lecture Notes in Computer Science, 2009, pages 747-754. Abstract/PDF DOI

  8. M.G.J. Kallenberg and N. Karssemeijer. "Using Volumetric Density Estimation in Computer Aided Mass Detection in Mammography", in: Proceedings of SPIE -- Volume 7263, Medical Imaging 2009: Computer-Aided Diagnosis, volume 7263, 2009, page 1, page 72600T. Abstract/PDF DOI

  9. P. Lo, B. van Ginneken, J.M. Reinhardt and M. de Bruijne. "Extraction of Airways from CT (EXACT09)", in: The Second International Workshop On Pulmonary Image Analysis, 2009, pages 175-189. Abstract/PDF

  10. P. Maduskar and M. Acharyya. "Automatic identification of intracranial hemorrhage in non-contrast CT with large slice thickness for trauma cases", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 726011.1-726011.8. Abstract/PDF DOI

  11. A. Mendrik, E.P.A. Vonken, A. Waaijer, E. Smit, M. Prokop and B. van Ginneken. "Segmentation of arteries and veins on 4D CT perfusion scans for constructing arteriograms and venograms", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590Z1-72590Z7. Abstract/PDF DOI

  12. S.E.A. Muenzing, K. Murphy, B. van Ginneken and J.P.W. Pluim. "Automatic detection of registration errors for quality assessment in medical image registration", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590K1-72590K9. Abstract/PDF DOI

  13. M. Niemeijer, M. Garvin, K. Lee, B. van Ginneken, M. Abràmoff and M. Sonka. "Registration of 3D spectral OCT volumes using 3D SIFT feature point matching", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72591I-1-72591I-8. Abstract/PDF DOI

  14. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic classification of retinal vessels into arteries and veins", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601F1-72601F8. Abstract/PDF DOI

  15. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "A Linking Framework for Pixel Classification Based Retinal Vessel Segmentation", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, pages 726216-1-726216-8. Abstract/PDF DOI

  16. M. Nillesen, R. Lopata, H. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "3D cardiac segmentation using temporal correlation of radio frequency ultrasound data", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, pages 927-934. Abstract/PDF DOI PMID 20426200

  17. R. Reinartz, B. Platel, T. Boselie, H. van Mameren, H. van Santbrink and B.M. ter Haar Romeny. "Cervical vertebrae tracking in video-fluoroscopy using the normalized gradient field", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, page Pt 1, pages 524-531. Abstract/PDF DOI PMID 20426028

  18. E. van Rikxoort, W. Baggerman and B. van Ginneken. "Automatic segmentation of the airway tree from thoracic CT scans using a multi-threshold approach", in: The Second International Workshop on Pulmonary Image Analysis, 2009, pages 341-349. Abstract/PDF

  19. E.M. van Rikxoort, M. Prokop, B. de Hoop, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Automatic segmentation of the pulmonary lobes from fissures, airways, and lung borders: evaluation of robustness against missing data", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, page 5761, pages 263-271. Abstract/PDF DOI PMID 20425996

  20. C.I. Sanchez, R. Hornero, A. Mayo and M. Garcia. "Mixture model-based clustering and logistic regression for automatic detection of microaneurysms in retinal images", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601M1-72601M8. Abstract/PDF DOI

  21. C.I. Sanchez, M. Niemeijer, T. Kockelkorn, M.D. Abràmoff and B. van Ginneken. "Active learning approach for detection of hard exudates, cotton wool spots, and drusen in retinal images", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601I1-72601I8. Abstract/PDF DOI

  22. M. Samulski, A. Hupse, C. Boetes, G. den Heeten and N. Karssemeijer. "Analysis of probed regions in an interactive CAD system for the detection of masses in mammograms", in: Medical Imaging, volume 7263 of Proceedings of the SPIE, 2009, page 1, page 726314. Abstract/PDF DOI

  23. G. van Schie and N. Karssemeijer. "Noise model for microcalcification detection in reconstructed tomosynthesis slices", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, page 72600M. Abstract/PDF DOI

  24. M. Velikova, M. Samulski, P.J. Lucas and N. Karssemeijer. "Causal Probabilistic Modelling for Two-View Mammographic Analysis", in: AIME '09: Proceedings of the 12th Conference on Artificial Intelligence in Medicine, 2009, pages 395-404. Abstract/PDF DOI

  25. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Automated calibration for computerized analysis of prostate lesions using pharmacokinetic magnetic resonance images", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, pages 836-843. Abstract/PDF PMID 20426189

  26. D. Vukadinovic, T. van Walsum, S. Rozie, T. de Weert, R. Manniesing, A. van der Lugt and W. Niessen. "Carotid artery segmentation and plaque quantification in CTA", in: Proc. IEEE Int. Symp. Biomedical Imaging: From Nano to Macro ISBI '09, 2009, pages 835-838. Abstract/PDF DOI


Abstracts

  1. E. Brunenberg, V. Prckovska, B. Platel, G. Strijkers and B.M. ter Haar Romeny. "Untangling a fiber bundle knot - Preliminary results on STN connectivity using DTI and HARDI on rat brains", in: Proceedings of the International Society for Magnetic Resonance in Medicine, 2009. Abstract/PDF

  2. W. Deserno, O.A. Debats, Y. Hoogeveen and J.O. Barentsz. "Effect of MR Lymphography on the Probability for Lymph Node Involvement in Patients with Prostate Cancer", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  3. B. van Ginneken, K. Murphy, E.M. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P.A. de Jong and H. Gietema. "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  4. B. de Hoop, P. Zanen, H. Gietema, B. van Ginneken, H. Groen and M. Prokop. "The Predictive Value of CT Quantified Pulmonary Emphysema on the Decline of Lung Function in Chronic Smokers: Results of a Long-term Follow-up Study", in: Annual Meeting of the Radiological Society of North America, 2009.

  5. I. Išgum, B. van Ginneken, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali and M. Prokop. "Automatic determination of cardiovascular risk from thoracic CT scans using a coronary calcium atlas", in: Annual Meeting of the Radiological Society of North America, 2009.

  6. I. Išgum, P.C.A. Jacobs, M. Gondrie, B. van Ginneken, M. Oudkerk, W.P.T.M. Mali, Y. van der Graaf and M. Prokop. "Cardiovascular risk assessment in lung cancer screening scans: do coronary and aortic calcium scores yield comparable risks for individual subjects?", in: European Congress of Radiology, 2009. Abstract

  7. G. Litjens, M. Heisen, J. Buurman, A. Wood, M. Medved, G. Karczmar and B.T. Haar-Romeny. "T1 Quantification: Variable Flip Angle Method vs Use of Reference Phantom", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  8. R. Manniesing, D. Vukadinovic, S. Rozie, M. Schaap, A. van der Lugt and W. Niessen. "Automated CTA Lumen Segmentation of the Atherosclerotic Carotid Artery Bifurcation", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract/PDF

  9. A.M. Mendrik, E.P.A. Vonken, E.J. Smit, B. van Ginneken and M. Prokop. "Reduction of Venous Overprojection Using Cerebral Arteriograms from CT Perfusion Scans of Subarachnoid Hemorrhage Patients", in: Annual Meeting of the Radiological Society of North America, 2009.

  10. K. Murphy, B. van Ginneken, J.P.W. Pluim, T.A. Altes, M. Prokop and E.E. de Lange. "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", in: Annual Meeting of the Radiological Society of North America, 2009.

  11. M. Niemeijer, M.K. Garvin, K. Lee, M. Sonka, B. van Ginneken and M.D. Abràmoff. "Automated Segmentation of the Retinal Vasculature Silhouettes in Isotropic 3D Optical Coherence Tomography Scans", in: Association for Research in Vision and Ophthalmology, 2009. Abstract

  12. E.M. van Rikxoort, M. Prokop, B. de Hoop, J.P.W. Pluim and B. van Ginneken. "Automatic Segmentation of the Pulmonary Lobes from Computed Tomography Chest CT Scans: Robustness Against Incomplete Fissures by Including Contextual Information", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  13. E.J. Smit, A.M. Mendrik, A. Waaijer, G. Bertolini, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Reconstruction of high-quality CTA from noisy cerebral CT perfusion data", in: European Congress of Radiology, 2009. Abstract

  14. D.F. Stegeman, G.A. van Elswijk, W.J.M. van de Ven and B.U. Kleine. "The three frequencies: the alpha-motoneuron pool as transmitter of rhythmicities in cortico-spinal motor drive", in: International workshop and conference on human reflexes: wiring and firing of motoneurons, 2009. Abstract

  15. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, T.T. de Weert, A. van der Lugt and W.J. Niessen. "Automated Segmentation of Atherosclerotic Plaque in MDCT Angiogaphy of the Carotid Artery", in: 2nd Dutch Conference on Biomedical Engineering, 2009. Abstract/PDF


Theses

  1. Y. Arzhaeva. "Computer-aided detection and quantification of interstitial lung disease from computed tomography and chest radiography", PhD thesis, Utrecht University, 2009. Abstract/PDF URL

  2. G. Litjens. "Pharmacokinetic modeling in breast cancer MRI", Masters thesis, Eindhoven University of Technology, 2009. Abstract/PDF

  3. E.M. van Rikxoort. "Segmentation of anatomical structures in chest CT scans", PhD thesis, Utrecht University, 2009. Abstract/PDF URL


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, J.R. McClelland, K. Mori, A. Reeves and J. Reinhardt. "The Second International Workshop on Pulmonary Image Analysis", 2009. Abstract/PDF URL

  2. R. Manniesing. "Read and Write Support for MevisLab Dicom/Tiff Format", 2009. Abstract/PDF URL

  3. R. Manniesing. "DicomImport", 2009. Abstract/PDF URL

  4. R. Manniesing, M. Viergever and W. Niessen. "Vessel Enhancing Diffusion", 2009. Abstract/PDF URL


2008

Papers in international journals

  1. M.D. Abràmoff, M. Niemeijer, M.S.A. Suttorp-Schulten, M.A. Viergever, S.R. Russell and B. van Ginneken. "Evaluation of a system for automatic detection of diabetic retinopathy from color fundus photographs in a large population of patients with diabetes", Diabetes Care 2008;31(2):193-198. Abstract/PDF DOI PMID 18024852

  2. S.G. Armato and B. van Ginneken. "Anniversary paper: image processing and manipulation through the pages of Medical Physics", Medical Physics 2008;35(10):4488-4500. Abstract/PDF DOI PMID 18975696

  3. A.L. Eilertsen, N. Karssemeijer, P. Skaane, E. Qvigstad and P.M. Sandset. "Differential impact of conventional and low-dose oral hormone therapy, tibolone and raloxifene on mammographic breast density, assessed by an automated quantitative method", British Journal of Obstetrics and Gynaecology 2008;115(6):773-779. Abstract/PDF DOI PMID 18355366

  4. B. van Ginneken. "Computer-Aided Diagnosis in Thoracic Computed Tomography", Imaging Decisions MRI 2008;12(3):11-22. Abstract/PDF DOI

  5. T. Hambrock, J.J. Fütterer, H.J. Huisman, C. Hulsbergen-van de Kaa, J. van Basten, I. van Oort, J.A. Witjes and J.O. Barentsz. "Thirty-two-channel coil 3T magnetic resonance-guided biopsies of prostate tumor suspicious regions identified on multimodality 3T magnetic resonance imaging: technique and feasibility", Investigative Radiology 2008;43(10):686-694. Abstract/PDF DOI PMID 18791410

  6. M. Kallenberg and N. Karssemeijer. "Computer-aided detection of masses in full-field digital mammography using screen-film mammograms for training", Physics in Medicine and Biology 2008;53(23):6879-6891. Abstract/PDF DOI PMID 19001703

  7. P. Koopmans, R. Manniesing, W. Niessen, M. Viergever and M. Barth. "MR venography of the human brain using susceptibility weighted imaging at very high field strength", Magnetic Resonance Materials in Physics, Biology and Medicine 2008;21(1-2):149-158. Abstract/PDF DOI PMID 18188626

  8. B.P.F. Lelieveldt and N. Karssemeijer. "Information Processing In Medical Imaging 2007", Medical Image Analysis 2008;12(6):729-730. PDF DOI PMID 18457986

  9. R. Manniesing, M.A. Viergever, A. van der Lugt and W.J. Niessen. "Cerebral arteries: fully automated segmentation from CT angiography--a feasibility study", Radiology 2008;247(3):841-846. Abstract/PDF DOI PMID 18487538

  10. J. Poza, R. Hornero, J. Escudero, A. Fernandez and C.I. Sanchez. "Regional analysis of spontaneous MEG rhythms in patients with Alzheimer's disease using spectral entropies", Annals of Biomedical Engineering 2008;36(1):141-152. Abstract/PDF DOI PMID 17994279

  11. E.M. van Rikxoort, B. van Ginneken, M. Klik and M. Prokop. "Supervised enhancement filters: application to fissure detection in chest CT scans", IEEE Transactions on Medical Imaging 2008;27(1):1-10. Abstract/PDF DOI PMID 18270056

  12. C.I. Sanchez, R. Hornero, M.I. Lopez, M. Aboy, J. Poza and D. Abasolo. "A novel automatic image processing algorithm for detection of hard exudates based on retinal image analysis", Medical Engineering and Physics 2008;30(3):350-357. Abstract/PDF DOI PMID 17556004

  13. C. Schaefer-Prokop, U. Neitzel, H.W. Venema, M. Uffmann and M. Prokop. "Digital chest radiography: an update on modern technology, dose containment and control of image quality", European Radiology 2008;18(9):1818-30. PDF DOI PMID 18431577

  14. C. Schaefer-Prokop and M. Prokop. "CTPA for the diagnosis of acute pulmonary embolism during pregnancy", European Radiology 2008;18(12):2705-2708. Abstract/PDF DOI PMID 18795302

  15. B.C. Stoel, D.G. Parr, E.M. Bakker, H. Putter, J. Stolk, H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Can the extent of low-attenuation areas on CT scans really demonstrate changes in the severity of emphysema?", Radiology 2008;247(1):293-4; author reply 294. PDF DOI PMID 18372475

  16. M. Uffmann, C. Schaefer-Prokop and U. Neitzel. "[Balance of required dose and image quality in digital radiography]", Radiologe 2008;48(3):249-257. Abstract DOI PMID 18259724

  17. J. Veltman, M. Stoutjesdijk, R. Mann, H.J. Huisman, J.O. Barentsz, J.G. Blickman and C. Boetes. "Contrast-enhanced magnetic resonance imaging of the breast: the value of pharmacokinetic parameters derived from fast dynamic imaging during initial enhancement in classifying lesions", European Radiology 2008;18(6):1123-1133. Abstract/PDF DOI PMID 18270714

  18. P.C. Vos, T. Hambrock, C.A.H. van de Kaa, J.J. Fütterer, J.O. Barentsz and H.J. Huisman. "Computerized analysis of prostate lesions in the peripheral zone using dynamic contrast enhanced MRI", Medical Physics 2008;35(3):888-899. Abstract/PDF DOI PMID 18404925


Papers in conference proceedings

  1. R. Brecheisen, A. Vilanova Bartroli, B. Platel and B.M. ter Haar Romeny. "Flexible GPU-Based Multi-Volume Ray-Casting", in: Vision Modeling and Visualization, 2008, pages 303-312. Abstract/PDF

  2. N. de Carvalho Ferreira, M.Velikova and P. Lucas. "Bayesian Modelling of Multi-View Mammography", in: ICML workshop: Machine Learning for Health Care Applications, 2008. PDF

  3. M. Garcia, C.I. Sanchez, M.I. Lopez, A. Diez and R. Hornero. "Automatic detection of red lesions in retinal images using a multilayer perceptron neural network", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 2008, 2008, pages 5425-5428. Abstract/PDF DOI PMID 19163944

  4. B. van Ginneken, W. Baggerman and E.M. van Rikxoort. "Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 5241 of Lecture Notes in Computer Science, 2008, pages 219-226. Abstract/PDF DOI PMID 18979751

  5. B. van Ginneken, A. Tan, K. Murphy, B.J. de Hoop and M. Prokop. "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, pages 69150X1-69150X10. Abstract/PDF DOI

  6. R. Hupse and N. Karssemeijer. "Feature selection for computer-aided detection: comparing different selection criteria", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, page 691503. Abstract/PDF DOI

  7. M.G.J. Kallenberg and N. Karssemeijer. "The Effect of Training with SFM Images in a FFDM CAD System", in: Proceedings of SPIE -- Volume 6915, Medical Imaging 2008: Computer-Aided Diagnosis, volume 6915, 2008, page 1, page 691510. Abstract/PDF DOI

  8. M.G.J. Kallenberg and N. Karssemeijer. "The Effect of Training Sample Size on Performance of Mass Detection", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 343-349. Abstract/PDF DOI

  9. N. Karssemeijer, A. Hupse, M. Samulski, M. Kallenberg, C. Boetes and G. Heeten. "An Interactive Computer Aided Decision Support System for Detection of Masses in Mammograms", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 273-278. Abstract/PDF DOI

  10. N. Karssemeijer, M. Samulski, G. den Heeten and C. Boetes. "Analysis of Observer Performance Based on Probing Patterns in an Interactive CAD System for Mammographic Mass Detection", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract URL

  11. N. Karssemeijer, M. Samulski, M. Kallenberg, A. Hupse, C. Boetes and G. den Heeten. "Effectiveness of an Interactive CAD System for Mammographic Mass Detection", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract URL

  12. R. MacLeod, E. Kholmovski, E. DiBella, R. Oakes, J. Blauer, E. Fish, S. Vijayakumar, M. Daccarett, N. Segerson and N. Marrouche. "Integration of MRI in evaluation and ablation of atrial fibrillation", in: Computers in Cardiology, 2008, pages 77-80. Abstract DOI

  13. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J.P.W. Pluim. "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5242 of Lecture Notes in Computer Science, 2008. Abstract/PDF DOI PMID 18982703

  14. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring. "Quantitative Assessment of Registration in Thoracic CT", in: The First International Workshop on Pulmonary Image Analysis, 2008, pages 203-211. Abstract/PDF

  15. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automated localization of the optic disc and the fovea", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pages 3538-3541. Abstract/PDF DOI PMID 19163472

  16. M. Niemeijer, M.K. Garvin, B. van Ginneken, M. Sonka and M.D. Abràmoff. "Vessel segmentation in 3D spectral OCT scans of the retina", in: Medical Imaging, volume 6914 of Proceedings of the SPIE, 2008. Abstract/PDF DOI

  17. E.M. van Rikxoort, M. de Bruijne and B. van Ginneken. "Integrating local voxel classification and global shape models for medical image segmentation", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 69144J-1 - 69144J-6. PDF DOI

  18. E.M. van Rikxoort, I. Išgum, M. Staring, S. Klein and B. van Ginneken. "Adaptive Local Multi-Atlas Segmentation: Application to Heart Segmentation in Chest CT Scans", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 691407-1-691407-6. Abstract/PDF DOI

  19. M. Samulski and N. Karssemeijer. "Matching mammographic regions in mediolateral oblique and cranio caudal views: a probabilistic approach", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, page 1, page 69151M. Abstract/PDF DOI

  20. M. Samulski and N. Karssemeijer. "Linking mass regions in mediolateral oblique and cranio caudal views", in: Proceedings of the 14th ASCI conference, 2008, pages 214-221.

  21. M. Samulski, N. Karssemeijer, C. Boetes and G. den Heeten. "An Interactive Computer-aided Detection Workstation for Reading Mammograms", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract/PDF URL

  22. G. van Schie and N. Karssemeijer. "Detection of Microcalcifications Using a Nonuniform Noise Model", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 378-384. Abstract/PDF DOI

  23. M. Velikova, H. Daniels and M. Samulski. "Partially Monotone Networks Applied to Breast Cancer Detection on Mammograms", in: ICANN '08: Proceedings of the 18th international conference on Artificial Neural Networks, Part I, 2008, pages 917-926. Abstract/PDF DOI

  24. M. Velikova, P.J.F. Lucas, N. Ferreira, M. Samulski and N. Karssemeijer. "A decision support system for breast cancer detection in screening programs", in: Proceeding of the 2008 conference on ECAI 2008, 2008, pages 658-662. Abstract

  25. M. Velikova, M. Samulski, N. Karssemeijer and P. Lucas. "Toward Expert Knowledge Representation for Automatic Breast Cancer Detection", in: AIMSA '08: Proceedings of the 13th international conference on Artificial Intelligence, 2008, pages 333-344. Abstract/PDF DOI

  26. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Combining T2-weighted with dynamic MR images for computerized classification of prostate lesions", in: Medical Imaging: Computer-Aided Diagnosis, volume 6915 of Proceedings of the SPIE, 2008.

  27. D. Vukadinovic, T. van Walsum, R. Manniesing, A. van der Lugt, T. de Weert and W. Niessen. "AdaBoost Classification for Model Based Segmentation of the Outer Vessel Wall", in: Medical Imaging, volume 6914 of Proceedings of the SPIE, 2008, pages 691418-1 - 691418-8. Abstract/PDF DOI


Abstracts

  1. A. Firouzian, R. Manniesing, A. van der Lugt, H. Flach and W. Niessen. "Intracranial Aneurysm Segmentation in CTA: Method and Quantitative Validation", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract/PDF

  2. B. van Ginneken, B. de Hoop and M. Prokop. "Automatic Estimation of Three-Dimensional Lung Volume from Posterior-Anterior and Lateral Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  3. B. van Ginneken, B. de Hoop, E.M. van Rikxoort, K. Murphy and M. Prokop. "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  4. B. van Ginneken, E.M. van Rikxoort, W. Baggerman, B. de Hoop and M. Prokop. "Automatic Extraction and Anatomical Labeling of the Airway Tree from Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  5. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen and M. Prokop. "Variability of semi-automated pulmonary nodule volume measurements: A comparison of 6 lung nodule evaluation software packages", in: Annual Meeting of the Radiological Society of North America, 2008.

  6. B. de Hoop, B. van Ginneken, C.M. Schaefer-Prokop, P.A. de Jong, H. Gietema and M. Prokop. "Workup of suspicious lesions on digital chest radiography: estimation of the number of unnecessary follow-up CT scans in relation to the threshold of radiological suspicion on chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  7. P. Koopmans, R. Manniesing, W. Niessen, M. Viergever and M. Barth. "Vein Classification using Vesselness Filters on SWI Data Acquired at 3T and 7T", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2008. Abstract/PDF

  8. K. Murphy, B. van Ginneken, E.M. van Rikxoort, B. de Hoop, J.P.W. Pluim and M. Prokop. "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  9. K. Murphy, M. Prokop, C.M. Schaefer-Prokop, H. Gietema, G.D. Nossent, B. van Ginneken, J.P.W. Pluim and Y. Arzhaeva. "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", in: Annual Meeting of the Radiological Society of North America, 2008.

  10. E.M. van Rikxoort, B. van Ginneken, J.G. Goldin, M.S. Brown and M. Prokop. "Automatic Quantification of Completeness of Pulmonary Fissures on a Large Database", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract


Theses

  1. S. Lafebre. "From cosmic particle to radio pulse", PhD thesis, Radboud University, Nijmegen, 2008. Abstract/PDF URL

  2. C.I. Sanchez. "Retinal image analysis by mixture model based clustering and discriminant analysis for automatic detection of hard exudates and haemorhages: A tool for diabetic retinopathy screening", PhD thesis, Universidad de Valladolid, Spain, 2008. Abstract/PDF


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The First International Workshop on Pulmonary Image Analysis", 2008. Abstract/PDF URL


2007

Papers in international journals

  1. Y. Arzhaeva, M. Prokop, D.M.J. Tax, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs using a reference standard based on computed tomography", Medical Physics 2007;34(12):4798-4809. Abstract/PDF DOI PMID 18196808

  2. A.A. Bankier, C. Schaefer-Prokop, V.D. Maertelaer, D. Tack, P. Jaksch, W. Klepetko and P.A. Gevenois. "Air trapping: comparison of standard-dose and simulated low-dose thin-section CT techniques", Radiology 2007;242(3):898-906. PDF PMID 17244721

  3. J.A. van Dalen, A.L. Hoffmann, V. Dicken, W.V. Vogel, B. Wiering, T.J. Ruers, N. Karssemeijer and W.J.G. Oyen. "A novel iterative method for lesion delineation and volumetric quantification with FDG PET", Nuclear Medicine Communications 2007;28(6):485-493. PDF DOI PMID 17460540

  4. S. van Engeland and N. Karssemeijer. "Combining two mammographic projections in a computer aided mass detection method", Medical Physics 2007;34(3):898-905. Abstract/PDF DOI PMID 17441235

  5. J.J. Fütterer, T.W.J. Scheenen, S.W.T.P.J. Heijmink, H.J. Huisman, C.A.H.-V. de Kaa, J.A. Witjes, A. Heerschap and J.O. Barentsz. "Standardized threshold approach using three-dimensional proton magnetic resonance spectroscopic imaging in prostate cancer localization of the entire prostate", Investigative Radiology 2007;42(2):116-122. Abstract/PDF DOI PMID 17220729

  6. H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Monitoring of smoking-induced emphysema with CT in a lung cancer screening setting: detection of real increase in extent of emphysema", Radiology 2007;244(3):890-897. Abstract/PDF DOI PMID 17709835

  7. A. Graser, F.T. Kolligs, T. Mang, C. Schaefer, S. Geisbüsch, M.F. Reiser and C.R. Becker. "Computer-aided detection in CT colonography: initial clinical experience using a prototype system", European Radiology 2007;17(10):2608-2615. Abstract/PDF DOI PMID 17429646

  8. S.W.T.P.J. Heijmink, J.J. Fütterer, T. Hambrock, S. Takahashi, T.W.J. Scheenen, H.J. Huisman, C.A. Hulsbergen-Van de Kaa, B.C. Knipscheer, L.A.L.M. Kiemeney, J.A. Witjes and J.O. Barentsz. "Prostate cancer: body-array versus endorectal coil MR imaging at 3 T--comparison of image quality, localization, and staging performance", Radiology 2007;244(1):184-195. Abstract/PDF DOI PMID 17495178

  9. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Detection of coronary calcifications from computed tomography scans for automated risk assessment of coronary artery disease", Medical Physics 2007;34(4):1450-1461. Abstract/PDF DOI PMID 17500476

  10. R. Manniesing, M.A. Viergever and W.J. Niessen. "Vessel axis tracking using topology constrained surface evolution", IEEE Transactions on Medical Imaging 2007;26(3):309-316. Abstract/PDF DOI PMID 17354637

  11. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Segmentation of the optic disc, macula and vascular arch in fundus photographs", IEEE Transactions on Medical Imaging 2007;26(1):116-127. Abstract/PDF DOI PMID 17243590

  12. M. Niemeijer, B. van Ginneken, S.R. Russel, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automated detection and differentiation of drusen, exudates, and cotton-wool spots in digital color fundus photographs for diabetic retinopathy diagnosis", Investigative Ophthalmology and Visual Science 2007;48(5):2260-2267. Abstract/PDF DOI PMID 17460289

  13. M. Nillesen, R. Lopata, I. Gerrits, L. Kapusta, H. Huisman, J. Thijssen and C. de Korte. "Segmentation of the heart muscle in 3-D pediatric echocardiographic images", Ultrasound in Medicine and Biology 2007;33(9):1453-1462. Abstract/PDF DOI PMID 17574727

  14. P. Peloschek, J. Sailer, M. Weber, C.J. Herold, M. Prokop and C.M. Schaefer-Prokop. "Pulmonary nodules: sensitivity of maximum intensity projection versus that of volume rendering of 3D multidetector CT data", Radiology 2007;243(2):561-569. PDF PMID 17456878

  15. A.A.J. Roelofs, N. Karssemeijer, N. Wedekind, C. Beck, S. van Woudenberg, P.R. Snoeren, J.H.C.L. Hendriks, M.R. del Turco, N. Bjurstam, H. Junkermann, D. Beijerinck, B. Seradour and C.J.G. Evertsz. "Importance of comparison of current and prior mammograms in breast cancer screening", Radiology 2007;242(1):70-77. PDF DOI PMID 17185661

  16. P.R. Snoeren and N. Karssemeijer. "Gray-scale and geometric registration of full-field digital and film-screen mammograms", Medical Image Analysis 2007;11(2):146-156. Abstract/PDF DOI PMID 17208511

  17. J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation and labeling in computed tomography scans using a general framework for detection, recognition and segmentation of objects in volumetric data", Medical Image Analysis 2007;11(1):35-46. Abstract/PDF DOI PMID 17126065

  18. M.J. Stoutjesdijk, J. Veltman, H. Huisman, N. Karssemeijer, J.O. Barentsz, J.G. Blickman and C. Boetes. "Automated analysis of contrast enhancement in breast MRI lesions using mean shift clustering for ROI selection", Journal of Magnetic Resonance Imaging 2007;26(3):606-614. Abstract/PDF DOI PMID 17729367

  19. S. Timp, C. Varela and N. Karssemeijer. "Temporal change analysis for characterization of mass lesions in mammography", IEEE Transactions on Medical Imaging 2007;26(7):945-953. Abstract/PDF DOI PMID 17649908

  20. W.V. Vogel, J.A. van Dalen, B. Wiering, H. Huisman, F.H.M. Corstens, T.J.M. Ruers and W.J.G. Oyen. "Evaluation of image registration in PET/CT of the liver and recommendations for optimized imaging", Journal of Nuclear Medicine 2007;48(6):910-919. Abstract/PDF DOI PMID 17504865


Papers in conference proceedings

  1. Y. Arzhaeva, E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of caudate nucleus in MR brain images with voxel classification", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 65-72. PDF

  2. E.J.L. Brunenberg, A. Vilanova, V. Visser-Vandewalle, Y. Temel, L. Ackermans, B. Platel and B.M. ter Haar Romeny. "Automatic trajectory planning for deep brain stimulation: a feasibility study", in: Medical Image Computing and Computer-Assisted Intervention, volume 10 of Lecture Notes in Computer Science, 2007, page Pt 1, pages 584-592. Abstract/PDF PMID 18051106

  3. M. Garcia, R. Hornero, C.I. Sanchez, M.I. Lopez and A. Diez. "Feature extraction and selection for the automatic detection of hard exudates in retinal images", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2007, pages 4969-4972. Abstract DOI PMID 18003122

  4. B. van Ginneken, T. Heimann and M. Styner. "3D Segmentation in the Clinic: A Grand Challenge", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 7-15. Abstract/PDF

  5. H. Huisman and N. Karssemeijer. "Chestwall segmentation in 3D breast ultrasound using a deformable volume model", in: Information Processing in Medical Imaging of Lecture Notes in Computer Science, 2007, pages 245-256. Abstract/PDF DOI PMID 17633704

  6. R. Manniesing and W. Niessen. "Automatic Segmentation of the Internal Carotid Arteries through the Skull Base", in: Medical Imaging, volume 6512 of Proceedings of the SPIE, 2007, pages 65120I-1 -65120I-5. Abstract/PDF DOI

  7. K. Murphy, A.M.R. Schilham, H. Gietema, M. Prokop and B. van Ginneken. "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", in: Medical Imaging, volume 6514 of Proceedings of the SPIE, 2007, pages 651410-1-651410-12. Abstract/PDF DOI

  8. E.M. van Rikxoort, Y. Arzhaeva and B. van Ginneken. "A multi-atlas approach to automatic segmentation of the caudate nucleus in MR brain images", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 29-36. Abstract/PDF

  9. M. Samulski, N. Karssemeijer, P. Lucas and P. Groot. "Classification of mammographic masses using support vector machines and Bayesian networks", in: Medical Imaging, volume 6514 of Proceedings of the SPIE, 2007, page 1, page 65141J. Abstract/PDF DOI

  10. M. Schaap, R. Manniesing, I. Smal, T. van Walsum, A. van der Lugt and W. Niessen. "Bayesian tracking of tubular structures and its application to carotid arteries in CTA", in: Medical Image Computing and Computer-Assisted Intervention, volume 10 of Lecture Notes in Computer Science, 2007, page Pt 2, pages 562-570. Abstract/PDF DOI PMID 18044613

  11. M. Velikova, N. de Carvalho Ferreira and P. Lucas. "Bayesian Network Decomposition for Modeling Breast Cancer Detection", in: Proceedings of the 11th Conference on Artificial Intelligence in Medicine, volume 4594 of Lecture Notes in Artificial Intelligence, 2007. Abstract/PDF DOI

  12. P. Vos, T. Hambrock, J. Fütterer, C. Hulsbergen-van De Kaa, J. Barentsz and H. Huisman. "Effect of calibration on computerized analysis of prostate lesions using quantitative dynamic contrast-enhanced magnetic resonance imaging", in: Medical Imaging: Computer-Aided Diagnosis, volume 6514 of Proceedings of the SPIE, 2007.


Abstracts

  1. Y. Arzhaeva, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", in: Annual Meeting of the Radiological Society of North America, 2007.

  2. Y. Arzhaeva, M. Prokop, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2007.

  3. H. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R. van Klaveren and M. Prokop. "Distribution of emphysema in heavy smokers: Impact on extent of airflow limitation and gas exchange impairment", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  4. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring in the Aorta in Low Dose Non-contrast-enhanced CT Scans of the Thorax", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  5. A.M. Mendrik, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Automatic segmentation of arteries and veins in 4D cerebral CT perfusion scans", in: Annual Meeting of the Radiological Society of North America, 2007.

  6. E.M. van Rikxoort, M. Prokop and B. van Ginneken. "Automatic Lung Segmentation from Chest CT Scans Using a Hybrid Algorithm Robust against Pathology", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  7. E.M. van Rikxoort, M. Prokop, B. de Hoop, H. Gietema and B. van Ginneken. "Automatic Estimation of Lobar and Segmental Variation of Emphysema Distribution in Chronic Smokers", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract


Theses

  1. H.A. Gietema. "Low Dose Computed Tomography of the Chest: Applications and Limitations", PhD thesis, Utrecht University, 2007. Abstract/PDF URL

  2. I. Išgum. "Computer-aided detection and quantification of arterial calcifications with CT", PhD thesis, Utrecht University, 2007. Abstract/PDF URL

  3. B. Platel. "Exploring the Deep Structure of Images", PhD thesis, Eindhoven University of Technology, 2007. Abstract/PDF URL


Other publications

  1. T. Heimann, M. Styner and B. van Ginneken. "3D Segmentation in the Clinic: A Grand Challenge", 2007.


2006

Papers in international journals

  1. S. van Engeland, P.R. Snoeren, H. Huisman, C. Boetes and N. Karssemeijer. "Volumetric breast density estimation from full-field digital mammograms", IEEE Transactions on Medical Imaging 2006;25(3):273-282. Abstract/PDF DOI PMID 16524084

  2. S. van Engeland, S. Timp and N. Karssemeijer. "Finding corresponding regions of interest in mediolateral oblique and craniocaudal mammographic views", Medical Physics 2006;33(9):3203-3212. Abstract/PDF DOI PMID 17022213

  3. J.J. Fütterer, S.W.T.P.J. Heijmink, T.W.J. Scheenen, J. Veltman, H.J. Huisman, P. Vos, C.A. Hulsbergen-van de Kaa, J.A. Witjes, P.F.M. Krabbe, A. Heerschap and J.O. Barentsz. "Prostate cancer localization with dynamic contrast-enhanced MR imaging and proton MR spectroscopic imaging", Radiology 2006;241(2):449-458. Abstract/PDF DOI PMID 16966484

  4. B. van Ginneken, M.B. Stegmann and M. Loog. "Segmentation of anatomical structures in chest radiographs using supervised methods: a comparative study on a public database", Medical Image Analysis 2006;10(1):19-40. Abstract/PDF DOI PMID 15919232

  5. R. Hornero, D. Abasolo, N. Jimeno, C.I. Sanchez, J. Poza and M. Aboy. "Variability, regularity, and complexity of time series generated by schizophrenic patients and control subjects", IEEE Transactions on Biomedical Engineering 2006;53(2):210-218. Abstract/PDF DOI PMID 16485749

  6. N. Karssemeijer, J.D.M. Otten, H. Rijken and R. Holland. "Computer aided detection of masses in mammograms as decision support", British Journal of Radiology 2006;79 Spec No 2:S123-S126. Abstract/PDF DOI PMID 17209117

  7. E.N.J.T. van Lin, J.J. Fütterer, S.W.T.P.J. Heijmink, L.P. van der Vight, A.L. Hoffmann, P. van Kollenburg, H.J. Huisman, T.W.J. Scheenen, J.A. Witjes, J.W. Leer, J.O. Barentsz and A.G. Visser. "IMRT boost dose planning on dominant intraprostatic lesions: gold marker-based three-dimensional fusion of CT with dynamic contrast-enhanced and 1H-spectroscopic MRI", International Journal of Radiation Oncology, Biology, Physics 2006;65(1):291-303. Abstract/PDF DOI PMID 16618584

  8. M. Loog and B. van Ginneken. "Segmentation of the posterior ribs in chest radiographs using iterated contextual pixel classification", IEEE Transactions on Medical Imaging 2006;25:602-11. Abstract/PDF DOI PMID 16689264

  9. M. Loog, B. van Ginneken and A.M.R. Schilham. "Filter learning: application to suppression of bony structures from chest radiographs", Medical Image Analysis 2006;10:826-840. Abstract/PDF DOI PMID 16859953

  10. R. Manniesing, B.K. Velthuis, M.S. van Leeuwen, I.C. van der Schaaf, P.J. van Laar and W.J. Niessen. "Level set based cerebral vasculature segmentation and diameter quantification in CT angiography", Medical Image Analysis 2006;10(2):200-214. Abstract/PDF DOI PMID 16263325

  11. R. Manniesing, M.A. Viergever and W.J. Niessen. "Vessel enhancing diffusion: a scale space representation of vessel structures", Medical Image Analysis 2006;10(6):815-825. Abstract/PDF DOI PMID 16876462

  12. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Image structure clustering for image quality verification of color retina images in diabetic retinopathy screening", Medical Image Analysis 2006;10(6):888-898. Abstract/PDF DOI PMID 17138215

  13. J.M. Reinhardt, B. van Ginneken and M. Sonka. "Special Issue on Pulmonary Imaging", IEEE Transactions on Medical Imaging 2006;25(4):381-384. PDF DOI

  14. A.A.J. Roelofs, S. van Woudenberg, J.D.M. Otten, J.H.C.L. Hendriks, A. Bödicker, C.J.G. Evertsz and N. Karssemeijer. "Effect of soft-copy display supported by CAD on mammography screening performance", European Radiology 2006;16(1):45-52. Abstract/PDF DOI PMID 16132926

  15. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Local noise weighted filtering for emphysema scoring of low-dose CT images", IEEE Transactions on Medical Imaging 2006;25:451-463. Abstract/PDF DOI PMID 16608060

  16. A.M.R. Schilham, B. van Ginneken and M. Loog. "A computer-aided diagnosis system for detection of lung nodules in chest radiographs with an evaluation on a public database", Medical Image Analysis 2006;10:247-258. Abstract/PDF DOI PMID 16293441

  17. S.E. Selvan, C.C. Xavier, N. Karssemeijer, J. Sequeira, R.A. Cherian and B.Y. Dhala. "Parameter estimation in stochastic mammogram model by heuristic optimization techniques", IEEE Transactions on Information Technology in Biomedicine 2006;10(4):685-695. Abstract/PDF DOI PMID 17044402

  18. I.C. Sluimer, M. Prokop, I. Hartmann and B. van Ginneken. "Automated classification of hyperlucency, fibrosis, ground glass, solid and focal lesions in high resolution CT of the lung", Medical Physics 2006;33(7):2610-2620. Abstract/PDF DOI PMID 16898465

  19. I.C. Sluimer, A.M.R. Schilham, M. Prokop and B. van Ginneken. "Computer analysis of computed tomography scans of the lung: a survey", IEEE Transactions on Medical Imaging 2006;25(4):385-405. Abstract/PDF DOI PMID 16608056

  20. S. Timp and N. Karssemeijer. "Interval change analysis to improve computer aided detection in mammography", Medical Image Analysis 2006;10(1):82-95. Abstract/PDF DOI PMID 15996893

  21. C. Varela, S. Timp and N. Karssemeijer. "Use of border information in the classification of mammographic masses", Physics in Medicine and Biology 2006;51(2):425-441. Abstract/PDF DOI PMID 16394348


Papers in conference proceedings

  1. Y. Arzhaeva, B. van Ginneken and D.M.J. Tax. "Image classification from generalized image distance features: application to detection of interstitial disease in chest radiographs", in: International Conference on Pattern Recognition, 2006. Abstract/PDF DOI

  2. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Improving computer-aided diagnosis of interstitial disease in chest radiographs by combining one-class and two-class classifiers", in: Medical Imaging, volume 6144 of Proceedings of the SPIE, 2006, pages 614458-1-614458-8. Abstract/PDF DOI

  3. E.L. van den Broek, E.M. van Rikxoort, T. Kok and T.E. Schouten. "M-HinTS: Mimicking Humans in Texture Sorting", in: Human Vision and Electronic Imaging XI of Proceedings of the SPIE, 2006, pages 332-343. Abstract/PDF DOI

  4. M. Garcia, C.I. Sanchez, A. Diez, M.I. Lopez and R. Hornero. "Detection of hard exudates based on neural networks as a diagnostic aid in the screening for diabetic retinopathy", in: Telemedicine in Future Health, 2006.

  5. B. van Ginneken. "Supervised probabilistic segmentation of pulmonary nodules in CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 4191 of Lecture Notes in Computer Science, 2006, pages 912-919. Abstract/PDF DOI PMID 17354860

  6. B. van Ginneken and A. Mendrik. "Image Denoising with k-nearest Neighbor and Support Vector Regression", in: International Conference on Pattern Recognition, volume 3, 2006, pages 603-606. Abstract/PDF DOI

  7. M.A.J. Klik, E.M. van Rikxoort, J.F. Peters, H.A. Gietema, M. Prokop and B. van Ginneken. "Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 494-497. Abstract/PDF DOI

  8. M. Loog and B. van Ginneken. "Bony Structure Suppression in Chest Radiographs", in: Computer Vision Approaches to Medical Image Analysis, volume 4241 of Lecture Notes in Computer Science, 2006, pages 166-177. Abstract/PDF DOI

  9. R. Manniesing and W.J. Niessen. "Shape Constrained Vessel Centerline Extraction by Integrating Surface Evolution and Topology Analysis", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 165-168. Abstract/PDF DOI

  10. A.M. Mendrik, E.P.A. Vonken, A.M.R. Schilham, M.A. Viergever and B. van Ginneken. "Hybrid diffusion compared with existing diffusion schemes on simulated low dose CT scans", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 1008-1011. Abstract/PDF DOI

  11. J. Poza, G. Vecilla, R. Hornero, M.I. Lopez, C.I. Sanchez and A. Diez. "TeleOftalWeb 3.0: Web-based ophthalmologic medical record", in: Telemedicine in Future Health, 2006.

  12. E.M. van Rikxoort and B. van Ginneken. "A pattern recognition approach to enhancing structures in 3D CT data", in: Medical Imaging of Proceedings of the SPIE, 2006, page 6144, pages 61441O-1-61441O-8. Abstract/PDF DOI

  13. C.I. Sanchez, M.I. Lopez, M. Garcia, A. Mayo and R. Hornero. "Automated retinal image analysis in a diabetic retinopathy telescreening program", in: Telemedicine in Future Health, 2006.

  14. C.I. Sanchez, A. Mayo, M. Garcia, M.I. Lopez and R. Hornero. "Automatic image processing algorithm to detect hard exudates based on mixture models", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 1, 2006, pages 4453-4456. Abstract DOI PMID 17945839

  15. A.M.R. Schilham and B. van Ginneken. "Simulating nodules in chest radiographs with real nodules from multi-slice CT images", in: Medical Imaging of Proceedings of the SPIE, 2006, page 6144, pages 614456-1-614456-8. Abstract/PDF DOI


Abstracts

  1. B. van Ginneken, M.A.J. Klik, E.M. van Rikxoort, H. Gietema, J. Peters and M. Prokop. "Computer-aided diagnosis for distinguishing benign perifissural opacities from other pulmonary nodules in computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF

  2. P.J. Koopmans, R. Manniesing, D.G. Norris, M.A. Viergever and M. Barth. "Vein Segmentation from 3D High Resolution MR Venograms by Using Vessel Enhancing Diffusion", in: European Society for Magnetic Resonance in Medicine and Biology, 2006. Abstract/PDF

  3. R. Manniesing and W.J. Niessen. "Automated Detection of the Internal Carotid Arteries in Multislice Cerebral CT Angiography", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF

  4. E.M. van Rikxoort, H. Gietema, M. Prokop and B. van Ginneken. "Fully automatic segmentation of pulmonary segments from computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract


Theses

  1. S. van Engeland. "Detection of mass lesions in mammograms by using multiple views", PhD thesis, Radboud University, Nijmegen, 2006. Abstract/PDF URL

  2. R. Manniesing. "Image Analysis in CT Angiography", PhD thesis, Utrecht University, 2006. Abstract/PDF

  3. M. Niemeijer. "Automatic detection of diabetic retinopathy in digital fundus photographs", PhD thesis, Utrecht University, 2006. Abstract/PDF URL

  4. M. Samulski. "Classification of Breast Lesions in Digital Mammograms", Masters thesis, Radboud University Nijmegen, 2006. Abstract/PDF

  5. S. Timp. "Analysis of Temporal Mammogram Pairs to Detect and Characterise Mass Lesions", PhD thesis, Radboud University, Nijmegen, 2006. Abstract/PDF URL


2005

Papers in international journals

  1. D. Abasolo, R. Hornero, P. Espino, J. Poza, C.I. Sanchez and R. de la Rosa. "Analysis of regularity in the EEG background activity of Alzheimer's disease patients with Approximate Entropy", Clinical Neurophysiology 2005;116(8):1826-1834. Abstract/PDF DOI PMID 15979403

  2. C. Balassy, M. Prokop, M. Weber, J. Sailer, C.J. Herold and C. Schaefer-Prokop. "Flat-panel display (LCD) versus high-resolution gray-scale display (CRT) for chest radiography: an observer preference study", American Journal of Roentgenology 2005;184(3):752-756. Abstract/PDF PMID 15728593

  3. J.J. Fütterer, M.R. Engelbrecht, H.J. Huisman, G.J. Jager, C.A. Hulsbergen-van de Kaa, J.A. Witjes and J.O. Barentsz. "Staging prostate cancer with dynamic contrast-enhanced endorectal MR imaging prior to radical prostatectomy: experienced versus less experienced readers", Radiology 2005;237(2):541-549. Abstract/PDF DOI PMID 16244263

  4. H.J. Huisman, J.J. Fütterer, E.N.J.T. van Lin, A. Welmers, T.W.J. Scheenen, J.A. van Dalen, A.G. Visser, J.A. Witjes and J.O. Barentsz. "Prostate cancer: precision of integrating functional MR imaging with radiation therapy treatment by using fiducial gold markers", Radiology 2005;236(1):311-317. Abstract/PDF DOI PMID 15983070

  5. E.N.J.T. van Lin, L.P. van der Vight, J.A. Witjes, H.J. Huisman, J.W. Leer and A.G. Visser. "The effect of an endorectal balloon and off-line correction on the interfraction systematic and random prostate position variations: a comparative study", International Journal of Radiation Oncology, Biology, Physics 2005;61(1):278-288. Abstract/PDF DOI PMID 15629621

  6. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction of image features using the canonical contextual correlation projection", Pattern Recognition 2005;38:2409-2418. Abstract/PDF DOI

  7. M. Memarsadeghi, G. Heinz-Peer, T.H. Helbich, C. Schaefer-Prokop, G. Kramer, M. Scharitzer and M. Prokop. "Unenhanced multi-detector row CT in patients suspected of having urinary stone disease: effect of section width on diagnosis", Radiology 2005;235(2):530-536. Abstract/PDF DOI PMID 15758192

  8. M. Niemeijer, B. van Ginneken, J. Staal, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", IEEE Transactions on Medical Imaging 2005;24(5):584-592. Abstract/PDF DOI PMID 15889546

  9. E. Oschatz, M. Prokop, M. Scharitzer, M. Weber, C. Balassy and C. Schaefer-Prokop. "Comparison of liquid crystal versus cathode ray tube display for the detection of simulated chest lesions", European Radiology 2005;15(7):1472-6. PDF

  10. J.D.M. Otten, N. Karssemeijer, J.H.C.L. Hendriks, J.H. Groenewoud, J. Fracheboud, A.L.M. Verbeek, H.J. de Koning and R. Holland. "Effect of recall rate on earlier screen detection of breast cancers based on the Dutch performance indicators", Journal of the National Cancer Institute 2005;97(10):748-754. PDF DOI PMID 15900044

  11. C. Schaefer-Prokop and M. Prokop. "MDCT for the diagnosis of acute pulmonary embolism", European Radiology 2005;15 Suppl 4:D37-D41. Abstract PMID 16479644

  12. I. Sluimer, M. Prokop and B. van Ginneken. "Toward automated segmentation of the pathological lung in CT", IEEE Transactions on Medical Imaging 2005;24(8):1025-1038. Abstract/PDF DOI PMID 16092334

  13. M.J. Stoutjesdijk, J.J. Fütterer, C. Boetes, L.E. van Die, G. Jager and J.O. Barentsz. "Variability in the description of morphologic and contrast enhancement characteristics of breast lesions on magnetic resonance imaging", Investigative Radiology 2005;40(6):355-362. Abstract/PDF PMID 15905722

  14. S. Timp, S. van Engeland and N. Karssemeijer. "A regional registration method to find corresponding mass lesions in temporal mammogram pairs", Medical Physics 2005;32(8):2629-2638. Abstract/PDF DOI PMID 16193793

  15. M. Uffmann, M. Prokop, E. Eisenhuber, M. Fuchsjäger, M. Weber and C. Schaefer-Prokop. "Computed radiography and direct radiography: influence of acquisition dose on the detection of simulated lung lesions", Investigative Radiology 2005;40(5):249-256. Abstract PMID 15829821

  16. M. Uffmann, M. Prokop, W. Kupper, T. Mang, V. Fiedler and C. Schaefer-Prokop. "Soft-copy reading of digital chest radiographs: effect of ambient light and automatic optimization of monitor luminance", Investigative Radiology 2005;40(3):180-185. Abstract/PDF PMID 15714093

  17. C. Varela, N. Karssemeijer, J.H.C.L. Hendriks and R. Holland. "Use of prior mammograms in the classification of benign and malignant masses", European Journal of Radiology 2005;56(2):248-255. Abstract/PDF DOI PMID 15890483

  18. W.V. Vogel, J.A. van Dalen, H. Huisman, W.J.G. Oyen and N. Karssemeijer. "Sliced alternating DICOM series: convenient visualisation of image fusion on PACS", European Journal of Nuclear Medicine and Molecular Imaging 2005;32(2):247-248. PDF DOI PMID 15690224


Papers in conference proceedings

  1. D. Abasolo, C. Gomez, J. Poza, M. Garcia, C.I. Sanchez and M. Lopez. "EEG background activity analysis in Alzheimer's disease patients with sample entropy", in: International Conference on Computational Bioengineering, 2005, pages 1067-1076.

  2. E.L. van den Broek and E.M. van Rikxoort. "Parallel-Sequential Texture Analysis", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 532-541. Abstract/PDF DOI

  3. E.L. van den Broek, E.M. van Rikxoort and T. Schouten. "Human-centered object-based image retrieval", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 492-501. Abstract/PDF DOI

  4. S. van Engeland and N. Karssemeijer. "Regrouping initial CAD mass detections to facilitate classification of suspicious regions in mammography", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 975-986. Abstract/PDF DOI

  5. S. van Engeland, C. Varela, S. Timp, P. Snoeren and N. Karssemeijer. "Using context for mass detection and classification in mammograms", in: Medical Imaging, volume 5794 of Proceedings of the SPIE, 2005, pages 94-102. Abstract/PDF DOI

  6. I. Išgum, B. van Ginneken, A. Rutten and M. Prokop. "Automated coronary calcification detection and scoring", in: 4th International Symposium on Image and Signal Processing and Analysis, 2005, pages 127-132. Abstract/PDF

  7. N. Karssemeijer, P.R. Snoeren and W. Zhang. "Linearization of mammograms using parameters derived from noise characteristics", in: Information Processing in Medical Imaging, volume 3565 of Lecture Notes in Computer Science, 2005, pages 258-269. Abstract/PDF DOI PMID 17354701

  8. R. Manniesing and W. Niessen. "Multiscale vessel enhancing diffusion in CT angiography noise filtering", in: Information Processing in Medical Imaging, volume 3565 of Lecture Notes in Computer Science, 2005, pages 138-149. Abstract/PDF DOI PMID 17354691

  9. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automatic detection of the presence of bright lesions in color fundus photographs", in: The 3rd European Medical and Biological Engineering Conference, 2005, pages 1832 (1-6). Abstract/PDF

  10. M. Niemeijer, B. van Ginneken, F. ter Haar and M.D. Abràmoff. "Automatic Detection of the Optic Disc, Fovea and Vascular Arch in Digital Color Photographs of the Retina", in: Proceedings of the British Machine Vision Conference, 2005, pages 109-118. Abstract/PDF

  11. E.M. van Rikxoort, E.L. van den Broek and T.E. Schouten. "Mimicking human texture classification", in: Human Vision and Electronic Imaging X of Proceedings of the SPIE, 2005, pages 215-226. Abstract/PDF DOI

  12. A.M.R. Schilham, M. Prokop, H. Gietema and B. van Ginneken. "Local noise reduction for emphysema scoring in low-dose CT images", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 921-929. Abstract/PDF DOI

  13. P.R. Snoeren and N. Karssemeijer. "Thickness correction of mammographic images by anisotropic filtering and interpolation of dense tissue", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 1521-1527. Abstract/PDF DOI


Abstracts

  1. B. van Ginneken, A.M.R. Schilham, H. Gietema and M. Prokop. "Automatic correction for the influence of inspiration on pulmonary emphysema quantification from multidetector CT scans", in: Annual Meeting of the Radiological Society of North America, 2005.

  2. B. van Ginneken, I.C. Sluimer, M. Prokop and I. Hartmann. "Automatic detection of the presence of hyperlucencies, fibrosis, ground-glass, consolidations, and focal abnormalities in high resolution CT (HRCT) lung data", in: Annual Meeting of the Radiological Society of North America, 2005.

  3. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring for Risk Assessment of Coronary Artery Disease", in: Annual Meeting of the Radiological Society of North America, 2005.

  4. A.M.R. Schilham and B. van Ginneken. "Computer-aided diagnosis as a second reader for nodule detection in chest radiographs versus single and double reading", in: European Congress of Radiology, 2005. Abstract

  5. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Noise Filtering for Reliable Emphysema Quantification in Thin-slice Low-dose CT Images", in: Annual Meeting of the Radiological Society of North America, 2005.


Theses

  1. I.C. Sluimer. "Automated image analysis of the pathological lung in CT", PhD thesis, Utrecht University, 2005. Abstract/PDF URL


Patents

  1. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", 2005. URL


2004

Papers in international journals

  1. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Interactive segmentation of abdominal aortic aneurysms in CTA images", Medical Image Analysis 2004;8(2):127-138. Abstract/PDF DOI PMID 15063862

  2. J.A. van Dalen, W. Vogel, H.J. Huisman, W.J.G. Oyen, G.J. Jager and N. Karssemeijer. "Accuracy of rigid CT-FDG-PET image registration of the liver", Physics in Medicine and Biology 2004;49(23):5393-5405. PDF DOI PMID 15656285

  3. J.J. Fütterer, T.W.J. Scheenen, H.J. Huisman, D.W.J. Klomp, F.A. van Dorsten, C.A. Hulsbergen-van de Kaa, J.A. Witjes, A. Heerschap and J.O. Barentsz. "Initial experience of 3 tesla endorectal coil magnetic resonance imaging and 1H-spectroscopic imaging of the prostate", Investigative Radiology 2004;39(11):671-680. Abstract/PDF PMID 15486528

  4. I. Išgum, B. van Ginneken and M. Olree. "Automatic detection of calcifications in the aorta from CT scans of the abdomen: 3D computer-aided diagnosis", Academic Radiology 2004;11:247-257. Abstract/PDF DOI PMID 15035514

  5. R. Manniesing, R. Kleihorst, A. van der Avoird and E. Hendriks. "Power analysis of a general convolution algorithm mapped on a linear processor array", Journal of VLSI Signal Processing Systems 2004;37(1):5-19. Abstract/PDF DOI

  6. K.J. McLoughlin, P.J. Bones and N. Karssemeijer. "Noise equalization for detection of microcalcification clusters in direct digital mammogram images", IEEE Transactions on Medical Imaging 2004;23(3):313-320. PDF DOI PMID 15027524

  7. J. Sailer, M. Prokop, U. Neitzel, M. Weber, P. Peloschek and C. Schaefer-Prokop. "Comparison of an automatic versus a semiautomatic mode for gray-scale adaptation for digital chest radiography", Investigative Radiology 2004;39(6):325-33. PDF

  8. P.R. Snoeren and N. Karssemeijer. "Thickness correction of mammographic images by means of a global parameter model of the compressed breast", IEEE Transactions on Medical Imaging 2004;23(7):799-806. PDF DOI PMID 15250632

  9. J.J. Staal, M.D. Abràmoff, M. Niemeijer, M.A. Viergever and B. van Ginneken. "Ridge Based Vessel Segmentation in Color Images of the Retina", IEEE Transactions on Medical Imaging 2004;23(4):501-509. Abstract/PDF DOI PMID 15084075

  10. S. Timp and N. Karssemeijer. "A new 2D segmentation method based on dynamic programming applied to computer aided detection in mammography", Medical Physics 2004;31(5):958-971. Abstract/PDF DOI PMID 15191279

  11. M. Uffmann and C. Schaefer-Prokop. "[Radiological diagnostics of Hodgkin- and non-Hodgkin lymphomas of the thorax]", Radiologe 2004;44(5):444-456. Abstract DOI PMID 15114475

  12. M. Uffmann, C. Schaefer-Prokop, U. Neitzel, M. Weber, C.J. Herold and M. Prokop. "Skeletal applications for flat-panel versus storage-phosphor radiography: effect of exposure on detection of low-contrast details", Radiology 2004;231(2):506-514. Abstract DOI PMID 15128995

  13. T. Veninga, H. Huisman, R.W.M. van der Maazen and H. Huizenga. "Clinical validation of the normalized mutual information method for registration of CT and MR images in radiotherapy of brain tumors", Journal of Applied Clinical Medical Physics 2004;5(3):66-79. Abstract/PDF PMID 15753941


Papers in conference proceedings

  1. E.L. van den Broek and E.M. van Rikxoort. "Evaluation of color representation for texture analysis", in: Proceedings of the 16th Belgian Dutch Artificial Intelligence Conference (BNAIC), 2004, pages 35-42. Abstract/PDF URL

  2. B. van Ginneken and M. Loog. "Pixel Position Regression - Application to medical image segmentation", in: International Conference on Pattern Recognition, 2004, pages 718-721. Abstract/PDF DOI

  3. R. Hornero, D. Abasolo, J. Poza, C.I. Sanchez, P. Espino and R. de la Rosa. "Use of wavelets packets to compare electroencephalogram signal (EEG) in patiens with Alzheimer's disease and control subjects", in: International Workshop of Systems, Signals and Image Processing, 2004, pages 35-38.

  4. R. Hornero, C.I. Sanchez and M.I. Lopez. "Automated retinal image analysis in a teleophthalmology diabetic retinopathy screening program", in: Telemedicine Journal and e-Health, 2004.

  5. I. Išgum, B. van Ginneken and M. Prokop. "A pattern recognition approach to automated coronary calcium scoring", in: International Conference on Pattern Recognition, 2004. Abstract/PDF DOI

  6. N. Karssemeijer, J.D. Otten, A.A.J. Roelofs, S. van Woudenberg and J.H.C.L. Hendriks. "Effect of independent multiple reading of mammograms on detection performance", in: Medical Imaging, volume 5372 of Proceedings of the SPIE, 2004, pages 82-89. PDF DOI

  7. M. Loog and B. van Ginneken. "Static posterior probability fusion for signal detection: applications in the detection of interstitial diseases in chest radiographs", in: International Conference on Pattern Recognition, 2004, pages 644-647. Abstract/PDF DOI

  8. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction by canonical contextual correlation projections", in: European Conference on Computer Vision, volume 3021 of Lecture Notes in Computer Science, 2004, pages 562-573. Abstract/PDF DOI

  9. M. Loog, B. van Ginneken and M. Nielsen. "Detection of interstitial lung disease in PA chest radiographs", in: Medical Imaging, volume 5368 of Proceedings of the SPIE, 2004, pages 848-855. Abstract/PDF DOI

  10. R. Manniesing and W.J. Niessen. "Local Speed Functions in Level Set Based Vessel Segmentation", in: Medical Image Computing and Computer-Assisted Intervention, volume 3216 of Lecture Notes in Computer Science, 2004, pages 475-482. Abstract/PDF DOI

  11. R. Manniesing, B.K. Velthuis, M. van Leeuwen and W.J. Niessen. "Skeletonization for re-initialization in level set-based vascular tree segmentation", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 506-514. Abstract/PDF DOI

  12. M. Niemeijer, J.J. Staal, B. van Ginneken, M. Loog and M.D. Abràmoff. "Comparative Study of Retinal Vessel Segmentation Methods on a New Publicly Available Database", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 648-656. Abstract/PDF DOI

  13. A. Roelofs, S. van Woudenberg, J. Hendriks, C. Evertsz and N. Karssemeijer. "Effects of computer-aided diagnosis on radiologists' detection of breast masses", in: IWDM '04: Proceedings of the 7th International Workshop on Digital Mammography, 2004, pages 219-224.

  14. C.I. Sanchez, R. Hornero, M.I. Lopez and J. Poza. "Retinal image analysis to detect and quantify lesions associated with diabetic retinopathy", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 3, 2004, pages 1624-1627. Abstract DOI PMID 17272012

  15. I.C. Sluimer, M. Niemeijer and B. van Ginneken. "Lung field segmentation from thin-slice CT scans in presence of severe pathology", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 1447-1455. Abstract/PDF DOI

  16. J.J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation in CT data", in: Computer Vision Approaches to Medical Image Analysis and Mathematical Methods in Biomedical Image Analysis, volume 3117 of Lecture Notes in Computer Science, 2004, pages 193-204. Abstract/PDF


Theses

  1. M. Loog. "Supervised Dimensionality Reduction and Contextual Pattern Recognition in Medical Image Processing", PhD thesis, Utrecht University, 2004. Abstract/PDF URL

  2. J.J. Staal. "Segmentation of elongated structures in medical images", PhD thesis, Utrecht University, 2004. Abstract/PDF URL


2003

Papers in international journals

  1. E. Eisenhuber, A. Stadler, M. Prokop, M. Fuchsjager, M. Weber and C. Schaefer-Prokop. "Detection of monitoring materials on bedside chest radiographs with the most recent generation of storage phosphor plates: dose increase does not improve detection performance", Radiology 2003;227(1):216-221. Abstract/PDF DOI PMID 12668747

  2. S. van Engeland, P. Snoeren, J. Hendriks and N. Karssemeijer. "A comparison of methods for mammogram registration", IEEE Transactions on Medical Imaging 2003;22(11):1436-1444. Abstract/PDF DOI PMID 14606677

  3. M.R. Engelbrecht, H.J. Huisman, R.J.F. Laheij, G.J. Jager, G.J.L.H. van Leenders, C.A. Hulsbergen-van de Kaa, J.J.M.C.H. de la Rosette, J.G. Blickman and J.O. Barentsz. "Discrimination of prostate cancer from normal peripheral zone and central gland tissue by using dynamic contrast-enhanced MR imaging", Radiology 2003;229(1):248-254. Abstract/PDF DOI PMID 12944607

  4. M.H. Fuchsjäger, C.M. Schaefer-Prokop, E. Eisenhuber, P. Homolka, M. Weber, M.A. Funovics and M. Prokop. "Impact of ambient light and window settings on the detectability of catheters on soft-copy display of chest radiographs at bedside", American Journal of Roentgenology 2003;181(5):1415-1421. PDF DOI PMID 14573447

  5. B. van Ginneken. "Computerized detection of interstitial disease in chest radiographs", Medical Imaging Technology 2003;21:15-20. Abstract/PDF DOI

  6. B. van Ginneken and B.M. ter Haar Romeny. "Multi-scale texture classification from generalized locally orderless images", Pattern Recognition 2003;36:899-911. Abstract/PDF DOI

  7. I. Išgum and B. van Ginneken. "CT segmentation programs extract calcifications", Diagnostic Imaging Europe 2003;19(6):11-16. Abstract/PDF

  8. N. Karssemeijer, J.D.M. Otten, A.L.M. Verbeek, J.H. Groenewoud, H.J. de Koning, J.H.C.L. Hendriks and R. Holland. "Computer-aided detection versus independent double reading of masses on mammograms", Radiology 2003;227(1):192-200. PDF DOI PMID 12616008

  9. M. Prokop, U. Neitzel and C. Schaefer-Prokop. "Principles of image processing in digital chest radiography", Journal of Thoracic Imaging 2003;18(3):148-164. Abstract/PDF PMID 12867812

  10. C. Schaefer-Prokop and J.S. Klein. "Digital chest radiography", Journal of Thoracic Imaging 2003;18(3):123. PDF

  11. C. Schaefer-Prokop, M. Uffmann, E. Eisenhuber and M. Prokop. "Digital radiography of the chest: detector techniques and performance parameters", Journal of Thoracic Imaging 2003;18(3):124-137. Abstract/PDF PMID 12867810

  12. C. Schaefer-Prokop, M. Uffmann, J. Sailer, N. Kabalan, C. Herold and M. Prokop. "[Digital thorax radiography: flat-panel detector or storage phosphor plates]", Radiologe 2003;43(5):351-361. Abstract DOI PMID 12764583

  13. I.C. Sluimer, P.F. van Waes, M.A. Viergever and B. van Ginneken. "Computer-aided diagnosis in high-resolution CT of the lungs", Medical Physics 2003;30(12):3081-3090. Abstract/PDF DOI PMID 14713074


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, L.W. Bartels, M.J. van der Laan, J.D. Blankensteijn, W.J. Niessen and M.A. Viergever. "Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images", in: Medical Image Computing and Computer-Assisted Intervention, volume 2879 of Lecture Notes in Computer Science, 2003, pages 538-545. Abstract/PDF DOI

  2. M. de Bruijne, B. van Ginneken, W.J. Niessen, M. Loog and M.A. Viergever. "Model-based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1560-1571. Abstract/PDF DOI

  3. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Adapting Active Shape Models for 3D segmentation of tubular structures in medical images", in: Information Processing in Medical Imaging, volume 2732 of Lecture Notes in Computer Science, 2003, pages 136-147. Abstract/PDF DOI PMID 15344453

  4. S. van Engeland, P.R. Snoeren, N. Karssemeijer and J.H.C.L. Hendriks. "Optimized perception of lesion growth in mammograms using digital display", in: Medical Imaging, volume 5034 of Proceedings of the SPIE, 2003, pages 25-31. Abstract DOI

  5. B. van Ginneken, M. de Bruijne, M. Loog and M.A. Viergever. "Interactive Shape Models", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1206-1216. Abstract/PDF DOI

  6. I. Išgum, B. van Ginneken and M.A. Viergever. "Automatic detection of calcifications in the aorta from abdominal CT scans", in: Computer Assisted Radiology and Surgery, 2003, pages 1037-1042. PDF DOI

  7. M.I. Lopez, C.I. Sanchez and R. Hornero. "Retinal image analysis to detect and quantify lesions associated with diabetic retinopathy", in: Association for Research in Vision and Ophthalmology, 2003.

  8. M. Loog, B. van Ginneken and M.A. Viergever. "Segmenting the posterior ribs in chest radiographs by iterated contextual pixel classification", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 609-618. Abstract/PDF DOI

  9. M. Niemeijer, B. van Ginneken, C. Maas, F.J.A. Beek and M.A. Viergever. "Assessing the Skeletal Age From a Hand Radiograph: Automating the Tanner-Whitehouse Method", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1197-1205. Abstract/PDF DOI

  10. T.A.A.J. Roelofs, S. van Woudenberg, J.H.C.L. Hendriks and N. Karssemeijer. "Optimized soft-copy display of digitized mammograms", in: Medical Imaging, volume 5034 of Proceedings of the SPIE, 2003, pages 10-19. Abstract DOI

  11. A.M.R. Schilham, B. van Ginneken and M. Loog. "Multi-scale nodule detection in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 2878 of Lecture Notes in Computer Science, 2003, pages 602-609. Abstract/PDF DOI

  12. P.R. Snoeren and N. Karssemeijer. "Gray scale registration of mammograms using a model of image acquisition", in: Information Processing in Medical Imaging, volume 18 of Lecture Notes in Computer Science, 2003, pages 401-412. Abstract/PDF DOI PMID 15344475

  13. C. Varela, J.M. Muller and N. Karssemeijer. "Mammographic mass characterization using sharpness and lobulation measures", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 120-129. Abstract/PDF DOI


Abstracts

  1. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection and Classification of Microaneurysms and Small Hemors in Colour Fundus Photographs", in: European Journal of Ophthalmology, 2003.

  2. A.M.R. Schilham, B. van Ginneken and M. Loog. "Influence of the Number of Training Samples for Computer-Aided Detection of Lung Nodules in Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2003.

  3. I.C. Sluimer, P.F.M.G. van Waes and B. van Ginneken. "Texture analysis for automated classification of lung HRCT images", in: Annual Meeting of the Radiological Society of North America, 2003.


Other publications

  1. M. Prokop, M. Galanski and C. Schaefer-Prokop. "Spiral and multislice computed tomography of the body", 2003. URL


2002

Papers in international journals

  1. C. Engelke, C. Schaefer-Prokop, E. Schirg, J. Freihorst, S. Grubnic and M. Prokop. "High-resolution CT and CT angiography of peripheral pulmonary vascular disorders", Radiographics 2002;22(4):739-764. Abstract/PDF PMID 12110707

  2. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "Active shape model segmentation with optimal features", IEEE Transactions on Medical Imaging 2002;21(8):924-933. Abstract/PDF DOI PMID 12472265

  3. B. van Ginneken, S. Katsuragawa, B.M. ter Haar Romeny, K. Doi and M.A. Viergever. "Automatic detection of abnormalities in chest radiographs using local texture analysis", IEEE Transactions on Medical Imaging 2002;21(2):139-149. Abstract/PDF DOI PMID 11929101

  4. S. Puig, C. Schaefer-Prokop, T. Mang and M. Prokop. "Single- and multi-slice spiral computed tomography of the paediatric kidney", European Journal of Radiology 2002;43(2):139-145. Abstract/PDF PMID 12127211

  5. C. Schaefer-Prokop and M. Prokop. "New imaging techniques in the treatment guidelines for lung cancer", European Respiratory Journal Supplement 2002;35:71s-83s. Abstract/PDF PMID 12064683

  6. C. Schaefer-Prokop, M. Uffmann and A. Stadler. "[Digital radiography: from storage phosphor plates to direct detector systems]", Wiener Medizinische Wochenschrift Supplementum 2002(113):30-34. Abstract PMID 12621834


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, W.J. Niessen, J.B.A. Maintz and M.A. Viergever. "Active shape model based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 4684 of Proceedings of the SPIE, 2002, pages 463-474. Abstract/PDF DOI

  2. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Automatic segmentation and texture analysis of PA chest radiographs to detect abnormalities related to interstitial disease and tuberculosis", in: Computer Assisted Radiology and Surgery, 2002, pages 685-688. DOI

  3. M. Loog and B. van Ginneken. "Supervised segmentation by Iterated Contextual Pixel Classification", in: International Conference on Pattern Recognition, 2002, pages 925-928. Abstract/PDF DOI

  4. I.C. Sluimer and B. van Ginneken. "Detection of abnormal tissue in HRCT scans of the chest", in: Computer Assisted Radiology and Surgery, 2002, page 1101. DOI

  5. J.J. Staal, S.N. Kalitzin, B. van Ginneken, M.D. Abràmoff, T. Berendschot and M.A. Viergever. "Classifying convex sets for vessel detection in retinal images", in: IEEE International Symposium on Biomedical Imaging, 2002, pages 269-272. Abstract/PDF DOI

  6. S. Timp, N. Karssemeijer and J. Hendriks. "Analysis of changes in masses using contrast and size measures", in: IWDM '02: Proceedings of the 6th international workshop on Digital Mammography, 2002, pages 240-242. DOI


2001

Papers in international journals

  1. E.A. Boss, L.F. Massuger, L.A. Pop, L.C. Verhoef, H.J. Huisman, H. Boonstra and J.O. Barentsz. "Post-radiotherapy contrast enhancement changes in fast dynamic MRI of cervical carcinoma", Journal of Magnetic Resonance Imaging 2001;13(4):600-606. Abstract/PDF DOI PMID 11276105

  2. G.M. te Brake and N. Karssemeijer. "Segmentation of suspicious densities in digital mammograms", Medical Physics 2001;28(2):259-266. Abstract/PDF DOI PMID 11243351

  3. M.L. Giger, N. Karssemeijer and S.G. Armato. "Computer-aided diagnosis in medical imaging", IEEE Transactions on Medical Imaging 2001;20(12):1205-1208. PDF PMID 11811820

  4. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Computer-aided diagnosis in chest radiography: a survey", IEEE Transactions on Medical Imaging 2001;20(12):1228-1241. Abstract/PDF DOI PMID 11811823

  5. H.J. Huisman, M.R. Engelbrecht and J.O. Barentsz. "Accurate estimation of pharmacokinetic contrast-enhanced dynamic MRI parameters of the prostate", Journal of Magnetic Resonance Imaging 2001;13(4):607-614. Abstract/PDF PMID 11276106

  6. C. Schaefer-Prokop, E. Eisenhuber, M. Fuchsjäger, S. Puig and M. Prokop. "[Current developments in the area of digital thoracic radiography]", Radiologe 2001;41(3):230-239. Abstract PMID 11322068

  7. C. Schaefer-Prokop, I. Nöbauer, C. Weidekamm and E. Katz-Papatheophilou. "[Radiological diagnosis of adult respiratory distress syndrome (ARDS)]", Wiener Medizinische Wochenschrift 2001;151(21-23):520-523. Abstract PMID 11762246

  8. C. Schaefer-Prokop, M. Prokop, D. Fleischmann and C. Herold. "High-resolution CT of diffuse interstitial lung disease: key findings in common disorders", European Radiology 2001;11(3):373-392. Abstract/PDF PMID 11288840

  9. M.J. Stoutjesdijk and J.O. Barentsz. "Prophylactic mastectomy in carriers of BRCA mutations", New England Journal of Medicine 2001;345(20):1499; author reply 1499-1499.. PDF DOI PMID 11794206

  10. M.J. Stoutjesdijk, C. Boetes, G.J. Jager, L. Beex, P. Bult, J.H. Hendriks, R.J. Laheij, L. Massuger, L.E. van Die, T. Wobbes and J.O. Barentsz. "Magnetic resonance imaging and mammography in women with a hereditary risk of breast cancer", Journal of the National Cancer Institute 2001;93(14):1095-1102. Abstract/PDF PMID 11459871


Papers in conference proceedings

  1. S. van Engeland and N. Karssemeijer. "Matching breast lesions in multiple mammographic views", in: Medical Image Computing and Computer-Assisted Intervention, volume 2208/2010 of Lecture Notes in Computer Science, 2001, pages 1172-1173. Abstract/PDF DOI

  2. B. van Ginneken. "Towards a clinical chest workstation", in: Proceedings of VISIM, 2001. Abstract/PDF

  3. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "A non-linear gray-level appearance model improves active shape model segmentation", in: IEEE Workshop on Mathematical Models in Biomedical Image Analysis, 2001, pages 205-212. Abstract/PDF DOI


Theses

  1. B. van Ginneken. "Computer-aided diagnosis in chest radiography", PhD thesis, Utrecht University, 2001. Abstract/PDF URL


2000

Papers in international journals

  1. G.M. te Brake, N. Karssemeijer and J.H. Hendriks. "An automatic method to discriminate malignant masses from normal tissue in digital mammograms", Physics in Medicine and Biology 2000;45(10):2843-2857. PDF PMID 11049175

  2. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", Medical Physics 2000;27:2445-2455. Abstract/PDF DOI PMID 11099215

  3. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", Journal of Visual Communication and Image Representation 2000;11:196-208. Abstract/PDF DOI

  4. W.J. Veldkamp and N. Karssemeijer. "Normalization of local contrast in mammograms", IEEE Transactions on Medical Imaging 2000;19(7):731-738. PDF DOI PMID 11055788

  5. W.J. Veldkamp, N. Karssemeijer, J.D. Otten and J.H. Hendriks. "Automated classification of clustered microcalcifications into malignant and benign types", Medical Physics 2000;27(11):2600-2608. Abstract/PDF DOI PMID 11128313


Papers in conference proceedings

  1. B. van Ginneken and B.M. ter Haar Romeny. "Automatic delineation of ribs in frontal chest radiographs", in: Medical Imaging, volume 3979 of Proceedings of the SPIE, 2000, pages 825-836. Abstract/PDF DOI

  2. R. Manniesing, I. Karkowski and H. Corporaal. "Automatic SIMD Parallelization of Embedded Applications Based on Pattern Recognition", in: Sixth International Euro-Par Conference on Parallel Processing of Lecture Notes in Computer Science, 2000, pages 349-356. Abstract/PDF DOI


Abstracts

  1. T. van Walsum, B. van Ginneken, J.J. Staal, E.J. Vonken and M.A. Viergever. "ImageXplorer (iX), an integrated Windows NT programming environment for rapid development of medical imaging applications", in: European Congress of Radiology, 2000.


Theses

  1. G.M. te Brake. "Computer Aided Detection of Masses in Digital Mammograms", PhD thesis, Radboud University, Nijmegen, 2000. Abstract/PDF URL

  2. W.J.H. Veldkamp. "Computer Aided Characterization of Microcalcification Clusters in Mammograms", PhD thesis, Radboud University, Nijmegen, 2000. Abstract/PDF URL


1999

Papers in international journals

  1. J.O. Barentsz, M. Engelbrecht, G.J. Jager, J.A. Witjes, J. de LaRosette, B.P. van Der Sanden, H.J. Huisman and A. Heerschap. "Fast dynamic gadolinium-enhanced MR imaging of urinary bladder and prostate cancer", Journal of Magnetic Resonance Imaging 1999;10(3):295-304. Abstract/PDF DOI PMID 10508289

  2. G.M. te Brake and N. Karssemeijer. "Single and multiscale detection of masses in digital mammograms", IEEE Transactions on Medical Imaging 1999;18(7):628-639. PDF DOI PMID 10504096

  3. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real world surfaces", ACM Transactions on Graphics 1999;18(1):1-34. Abstract/PDF DOI

  4. C.H. van Gils, J.H. Hendriks, R. Holland, N. Karssemeijer, J.D. Otten, H. Straatman and A.L. Verbeek. "Changes in mammographic breast density and concomitant changes in breast cancer risk", European Journal of Cancer Prevention 1999;8(6):509-515. PDF PMID 10643940

  5. B. van Ginneken, J.J. Koenderink and K.J. Dana. "Texture histograms as a function of irradiation and viewing direction", International Journal of Computer Vision 1999;31(2-3):169-184. Abstract/PDF DOI

  6. N. Karssemeijer, W.J. Veldkamp, G.M. te Brake and J.H. Hendriks. "[Reading screening mammograms with the help of neural networks]", Nederlands Tijdschrift voor Geneeskunde 1999;143(45):2232-2236. PDF PMID 10578420

  7. C. Schaefer-Prokop. "Chest radiography: potential and limitations", Minerva Anestesiol 1999;65(5 Suppl 1):10-11. PMID 10389418


Papers in conference proceedings

  1. G.M. te Brake, M.J. Stoutjesdijk and N. Karssemeijer. "Discrete dynamic contour model for mass segmentation in digital mammograms", in: Medical Imaging, volume 3661 of Proceedings of the SPIE, 1999, pages 911-919. Abstract DOI

  2. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", in: Scale-Space Theories in Computer Vision, volume 1682 of Lecture Notes in Computer Science, 1999, pages 10-21. Abstract/PDF DOI

  3. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 1679 of Lecture Notes in Computer Science, 1999, pages 184-191. Abstract/PDF DOI

  4. N. Karssemeijer. "Local orientation distribution as a function of spatial scale for detection of masses in mammograms", in: Information Processing in Medical Imaging, volume 1613 of Lecture Notes in Computer Science, 1999, pages 280-293. Abstract/PDF DOI

  5. R. Manniesing, I. Karkowski and H.Corporaal. "Evaluation of a Potential for Automatic SIMD Parallelization of Embedded Applications", in: Fifth Annual Conference of the Advanced School for Computing and Imaging, 1999, pages 103-110. Abstract/PDF

  6. W.J.H. Veldkamp and N. Karssemeijer. "Improved method for detection of microcalcification clusters in digital mammograms", in: Medical Imaging, volume 3661 of Proceedings of the SPIE, 1999, pages 512-522. Abstract DOI


Theses

  1. R. Manniesing. "Power Analysis of a General Convolution Algorithm mapped on a Linear Processor Array", Masters thesis, Delft University of Technology, Electrical Engineering, 1999. Abstract/PDF


1998

Papers in international journals

  1. G.M. te Brake, N. Karssemeijer and J.H. Hendriks. "Automated detection of breast carcinomas not detected in a screening program", Radiology 1998;207(2):465-471. PDF PMID 9577496

  2. B. van Ginneken, M. Stavridi and J.J. Koenderink. "Diffuse and specular reflectance from rough surfaces", Applied Optics 1998;37(1):130-139. Abstract/PDF DOI PMID 18268570

  3. H.J. Huisman and J.H. Thijssen. "An in vivo ultrasonic model of liver parenchyma", IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control 1998;45(3):739-750. Abstract/PDF DOI PMID 18244225

  4. H.J. Huisman and J.M. Thijssen. "Adaptive texture feature extraction with application to ultrasonic image analysis", Ultrasonic Imaging 1998;20(2):132-148. Abstract/PDF DOI PMID 9691370

  5. H.J. Huisman, J.M. Thijssen, D.J. Wagener and G.J. Rosenbusch. "Quantitative ultrasonic analysis of liver metastases", Ultrasound in Medicine and Biology 1998;24(1):67-77. Abstract/PDF DOI PMID 9483773

  6. N. Karssemeijer. "Automated classification of parenchymal patterns in mammograms", Physics in Medicine and Biology 1998;43(2):365-378. PDF DOI PMID 9509532


Papers in conference proceedings

  1. R. Manniesing, R. Kleihorst, R. van der Vleuten and E. Hendriks. "Implementation of Lossless Coding for Embedded Compression", in: IEEE Program for Research on Integrated Systems and Circuits/Workshop on Circuits, Systems and Signal Processing, 1998. Abstract/PDF


Theses

  1. H. Huisman. "In vivo ultrasonic tissue characterization of liver metastases", PhD thesis, Radboud University, Nijmegen, 1998. Abstract/PDF URL


1997

Papers in international journals

  1. N. Karssemeijer and J.H. Hendriks. "Computer-assisted reading of mammograms", European Radiology 1997;7(5):743-748. Abstract/PDF DOI PMID 9166576

  2. M. Prokop, C. Schaefer-Prokop and M. Galanski. "Spiral CT angiography of the abdomen", Abdominal Imaging 1997;22(2):143-153. PMID 9013522

  3. M. Prokop and C.M. Schaefer-Prokop. "Digital image processing", European Radiology 1997;7(11):S73-S82. Abstract PMID 9169105

  4. M. Prokop, H.O. Shin, A. Schanz and C.M. Schaefer-Prokop. "Use of maximum intensity projections in CT angiography: a basic review", Radiographics 1997;17(2):433-451. Abstract PMID 9084083

  5. C. Schaefer-Prokop and M. Prokop. "Digital radiography of the chest: comparison of the selenium detector with other imaging systems", Medica Mundi 1997;41(1):2-11. PDF

  6. C.M. Schaefer-Prokop and M. Prokop. "Storage phosphor radiography", European Radiology 1997;7 Suppl 3:S58-S65. Abstract PMID 9169103

  7. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface bidirectional reflection distribution function and the texture of bricks and tiles", Applied Optics 1997;36(16):3717-3725. Abstract/PDF DOI PMID 18253397


Papers in conference proceedings

  1. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real-world surfaces", in: Computer Vision and Pattern Recognition, 1997, pages 151-157. Abstract/PDF DOI


1996

Papers in international journals

  1. J.O. Barentsz, G.J. Jager, P.B. van Vierzen, J.A. Witjes, S.P. Strijk, H. Peters, N. Karssemeijer and S.H. Ruijs. "Staging urinary bladder cancer after transurethral biopsy: value of fast dynamic contrast-enhanced MR imaging", Radiology 1996;201(1):185-193. PDF PMID 8816542

  2. H.J. Huisman and J.M. Thijssen. "Precision and accuracy of acoustospectrographic parameters", Ultrasound in Medicine and Biology 1996;22(7):855-871. Abstract/PDF DOI PMID 8923705

  3. N. Karssemeijer and G. te Brake. "Detection of stellate distortions in mammograms", IEEE Transactions on Medical Imaging 1996;15(5):611-619. PDF DOI PMID 18215942

  4. N. Karssemeijer and M.A.O. Thijssen. "Determination of contrast-detail curves of mammography systems by automated image analysis", Digital Mammography 1996;96:155-160. PDF

  5. M. Prokop, C. Schaefer-Prokop and M. Galanski. "[Spiral CT of the lung. Technique, findings, value]", Radiologe 1996;36(6):457-469. Abstract PMID 8767115

  6. C.M. Schaefer-Prokop, M. Prokop, A. Schmidt, U. Neitzel and M. Galanski. "Selenium radiography versus storage phosphor and conventional radiography in the detection of simulated chest lesions", Radiology 1996;201(1):45-50. Abstract PMID 8816519


Papers in conference proceedings

  1. F. Leymarie, A. de la Fortelle, J.J. Koenderink, A.M.L. Kappers, M. Stavridi, B. van Ginneken, S. Muller, S. Krake, O. Faugeras, L. Robert, C. Gauclin, S. Laveau and C. Zeller. "REALISE: reconstruction of REALity from Image SEquences", in: International Conference on Image Processing, 1996, pages 651-654. Abstract/PDF DOI

  2. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface BRDF and texture of bricks", in: Three-Dimensional and Unconventional Imaging for Industrial Inspection and Metrology, volume 2599 of Proceedings of the SPIE, 1996, pages 406-417. Abstract/PDF DOI


1995

Papers in international journals

  1. A.G. Leppert, M. Prokop, C.M. Schaefer-Prokop and M. Galanski. "Detection of simulated chest lesions: comparison of a conventional screen-film combination, an asymmetric screen-film system, and storage phosphor radiography", Radiology 1995;195(1):259-263. Abstract PMID 7892482

  2. C.J. Olbricht, K. Paul, M. Prokop, A. Chavan, C.M. Schaefer-Prokop, K. Jandeleit, K.M. Koch and M. Galanski. "Minimally invasive diagnosis of renal artery stenosis by spiral computed tomography angiography", Kidney International 1995;48(4):1332-1337. Abstract PMID 8569096


1994

Papers in international journals

  1. A.P. Berkhoff, H.J. Huisman, J.M. Thijssen, E.M. Jacobs and R.J. Homan. "Fast scan conversion algorithms for displaying ultrasound sector images", Ultrasonic Imaging 1994;16(2):87-108. Abstract/PDF DOI PMID 7974911

  2. M. Galanski, M. Prokop, A. Chavan, C. Schaefer, K. Jandeleit and C. Olbricht. "[Accuracy of CT angiography in the diagnosis of renal artery stenosis]", RöFo 1994;161(6):519-525. Abstract DOI PMID 7803775

  3. W.A. Kalender, K. Wedding, A. Polacin, M. Prokop, C. Schaefer-Prokop and M. Galanski. "[Basic principles of vascular imaging with spiral CT]", Aktuelle Radiologie 1994;4(6):287-297. Abstract PMID 7819289

  4. T.P. de Rooij, J.W. Oestmann, L.J. Schultze Kool, H.A. Vrooman, M. Prokop and C.M. Schaefer. "Application of AMBER in single- and dual-energy digital imaging: improvement in noise level and display dynamic range", Radiographics 1994;14(2):407-414. Abstract PMID 8190963


1993

Papers in international journals

  1. A. Chavan, M. Galanski, K. Jandeleit, M. Prokop and C. Schaefer. "The kissing balloons technique. Simultaneous dilatation of stenoses of branch arteries at the bifurcation of the renal artery", Acta Radiologica 1993;34(5):486-488. Abstract/PDF DOI PMID 8369186

  2. M. Galanski, A. Chavan, M. Prokop, C. Schaefer and J. Harms. "Current status of the imaging modalities in the pre- and postoperative diagnostic workup of liver transplant patients", Bildgebung 1993;60(2):56-62. Abstract PMID 8358213

  3. M. Galanski, M. Prokop, A. Chavan, C.M. Schaefer, K. Jandeleit and J.E. Nischelsky. "Renal arterial stenoses: spiral CT angiography", Radiology 1993;189(1):185-192. Abstract PMID 8372191

  4. T. Graeter, C. Schaefer, M. Prokop and J. Laas. "Three-dimensional vascular imaging--an additional diagnostic tool", Thoracic and Cardiovascular Surgeon 1993;41(3):183-185. Abstract DOI PMID 8367872

  5. N. Karssemeijer. "Adaptive noise equalization and recognition of microcalcification clusters in mammograms", Int J Patt Recogn Artif Intell 1993;7:1357-1375. PDF DOI

  6. N. Karssemeijer, J.T. Frieling and J.H. Hendriks. "Spatial resolution in digital mammography", Investigative Radiology 1993;28(5):413-419. Abstract/PDF PMID 8496034

  7. M. Prokop, C. Schaefer, W.A. Kalender, A. Polacin and M. Galanski. "[Vascular imaging with spiral-CT. The path to CT-angiography]", Radiologe 1993;33(12):694-704. Abstract PMID 8303028

  8. M. Prokop, C.M. Schaefer, J.W. Oestmann and M. Galanski. "Improved parameters for unsharp mask filtering of digital chest radiographs", Radiology 1993;187(2):521-526. Abstract PMID 8475301

  9. C.M. Schaefer and M. Prokop. "Storage phosphor radiography of the chest", Radiology 1993;186(2):314-315. PMID 8421725


Papers in conference proceedings

  1. N. Karssemeijer. "Common database for research in mammographic image analysis", in: Medical Imaging, volume 1905 of Proceedings of the SPIE, 1993, pages 542-543. DOI

  2. N. Karssemeijer. "Recognition of clustered microcalcifications using a random field model", in: Medical Imaging, volume 1905 of Proceedings of the SPIE, 1993, pages 776-786. Abstract/PDF DOI


1992

Papers in international journals

  1. M. Galanski, M. Prokop, E. Thorns, J.W. Oestmann, S. Reichelt, B. Haubitz, H. Milbradt, A. Gräser, L. Verner and C. Schaefer. "The visibility of a central venous catheter using digital luminescence radiography in intensive care radiology", RöFo 1992;156(1):68-72. Abstract/PDF DOI PMID 1733477

  2. M. Galanski, E. Schmoll, S. Reichelt, G. Böhmer, M. Prokop, C. Schaefer, A. Schüler, B. Ringe, F.W. Schmidt and H.J. Schmoll. "Chemoembolization of hepatocellular carcinoma in cases of isolated liver involvement", Radiologe 1992;32(2):49-55. Abstract PMID 1314400

  3. N. Karssemeijer. "Stochastic model for automated detection of calcifications in digital mammograms", Image and Vision Computing 1992;10(6):369 - 375. Abstract/PDF DOI

  4. H.W. Nab, N. Karssemeijer, L.J.V. Erning and J.H. Hendriks. "Comparison of digital and conventional mammography: a ROC study of 270 mammograms", Medical Informatics 1992;17(2):125-131. PDF PMID 1405832

  5. C.M. Schaefer, M. Prokop, J.W. Oestmann, W. Wiesmann, B. Haubitz, A. Meschede, S. Reichelt, E. Schirg, H.S. Stender and M. Galanski. "Impact of hard-copy size on observer performance in digital chest radiography", Radiology 1992;184(1):77-81. Abstract/PDF DOI PMID 1609106


1991

Papers in international journals

  1. J.W. Oestmann, M. Prokop, C.M. Schaefer and M. Galanski. "Hardware and software artifacts in storage phosphor radiography", Radiographics 1991;11(5):795-805. Abstract/PDF PMID 1947316

  2. J.W. Oestmann, S. Reichelt, M. Prokop, C. Schaefer and M. Galanski. "Digital projection radiography", Radiologe 1991;31(1):1-7. Abstract PMID 2006247


Papers in conference proceedings

  1. N. Karssemeijer and L.J. van Erning. "Iso-precision scaling of digitized mammograms to facilitate image analysis", in: Medical Imaging, volume 1445 of Proceedings of the SPIE, 1991, pages 166-177. Abstract/PDF DOI


1990

Papers in international journals

  1. N. Karssemeijer. "A statistical method for automatic labeling of tissues in medical images", Machine Vision and Applications 1990;3:75-86. Abstract/PDF URL

  2. N. Karssemeijer. "A relaxation method for image segmentation using a spatially dependent stochastic model", Pattern Recognition Letters 1990;11(1):13 - 23. Abstract/PDF DOI

  3. H.W. Nab, N. Karssemeijer, L.J. van Erning, A.L. Verbeek and J.H. Hendriks. "Digital mammography is very useful in mass screening of breast cancer", Nederlands Tijdschrift voor Geneeskunde 1990;134(49):2383-2387. Abstract/PDF PMID 2263263

  4. C. Schaefer, M. Prokop and M. Galanski. "[Drug-induced changes in the lungs]", Radiologe 1990;30(12):564-573. Abstract PMID 2290925


1989

Theses

  1. N. Karssemeijer. "Interpretation of Medical Images by Model Guided Analysis", PhD thesis, Radboud University, Nijmegen, 1989. Abstract/PDF URL


1988

Papers in international journals

  1. N. Karssemeijer, L.J. van Erning and E.G. Eijkman. "Recognition of organs in CT-image sequences: a model guided approach", Computers and Biomedical Research 1988;21(5):434-448. PDF DOI PMID 3180744

  2. P. Vink and N. Karssemeijer. "Low back muscle activity and pelvic rotation during walking", Anatomy and Embryology 1988;178(5):455-460. Abstract/PDF DOI PMID 3177896


1987

Papers in international journals

  1. N. Karssemeijer and E.G. Eijkman. "Modelling and representation of myocardial perfusion images for the evaluation of diagnostic properties", Medical and Biological Engineering and Computing 1987;25(2):181-188. PDF DOI PMID 3695622